View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_13 (Length: 311)
Name: NF10437_1D_low_13
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 32202596 - 32202328
Alignment:
| Q |
21 |
tttaattgtaaaaacccatctgcaccctaccgttttcttccctcttggtaaagttacaagatcccaagtgttgnnnnnnnnnnnnnnnnnaagttgtcat |
120 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32202596 |
tttaattgtaaaaacccatctgcaccccaccgttttcttccctcttggtaaagttacaagatcccaagtgttgttttttttta-------aagttgtcat |
32202504 |
T |
|
| Q |
121 |
ctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatat |
220 |
Q |
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||||||||||| ||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32202503 |
ctcctcaaccattgcagcagttcagttaggatctgctaaagcttcatatacattactaggaatagaaatcgaggataattgagatacaaaagatgcatat |
32202404 |
T |
|
| Q |
221 |
gaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32202403 |
gaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcatatc |
32202328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 40455051 - 40455320
Alignment:
| Q |
21 |
tttaattgtaaaaacccatctgcaccctaccgttttcttccctcttggtaaagttacaagatcccaagtgttgnnnnnnnnnnnnnnnnnaagttgtcat |
120 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40455051 |
tttaattgtaaaaatccatctgcaccccaccgttttcttccctcttggtaaagttacaagatcccaagtgtt------tttttttttttaaagctgtcat |
40455144 |
T |
|
| Q |
121 |
ctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatat |
220 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40455145 |
ctcctcaaccattgcagcagtccagttaggatctgctaaagcttcatgtacattactaggaatagaaatcgaggataattgagatacaaaagatgcatat |
40455244 |
T |
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| Q |
221 |
gaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatc |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40455245 |
gaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcatatc |
40455320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 56391102 - 56391366
Alignment:
| Q |
25 |
attgtaaaaacccatctgcaccctaccgttttcttccctcttggtaaagttacaagatcccaagtgttgnnnnnnnnnnnnnnnnnaagttgtcatctcc |
124 |
Q |
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||||||||||||||| ||||||| || | ||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
56391102 |
attgtaaaaacccatttgcaccccactggtttcttcccacttggtaaagtcacaagatcccaagtgttgttcttttcta-------aagctgtcatctcc |
56391194 |
T |
|
| Q |
125 |
tcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatatgacc |
224 |
Q |
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||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
56391195 |
tcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgatgcatatgacc |
56391294 |
T |
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| Q |
225 |
gagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatc |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
56391295 |
gagataacttgtgagttgacacataattactaatgggatatttagctttggattgagggtctggttcatatc |
56391366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 296
Target Start/End: Complemental strand, 39744357 - 39744093
Alignment:
| Q |
25 |
attgtaaaaacccatctgcaccctaccgttttcttccctcttggtaaagttacaagatcccaagtgttgnnnnnnnnnnnnnnnnnaagttgtcatctcc |
124 |
Q |
| |
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||||||||||||||| ||||||| || | ||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
39744357 |
attgtaaaaacccatttgcaccccactggtttcttcccacttggtaaagtcacaagatcccaagtgttgttcttttcta-------aagctgtcatctcc |
39744265 |
T |
|
| Q |
125 |
tcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatatgacc |
224 |
Q |
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||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |
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| T |
39744264 |
tcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgatgcatatgact |
39744165 |
T |
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| Q |
225 |
gagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcatatc |
296 |
Q |
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||||||||||||||| ||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||| |
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| T |
39744164 |
gagataacttgtgagttgacacataattactaatgaggtatttagctttggattgagggtctggttcatatc |
39744093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 27515458 - 27515607
Alignment:
| Q |
147 |
taggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatatgaccgagataacttgtgagatgacac |
246 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
27515458 |
taggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgatgcatatgaccgagataacttgtgagttgacac |
27515557 |
T |
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| Q |
247 |
ataattactaatgggatattttactttggattggaggtatggttcatatc |
296 |
Q |
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||||||||||||||||||||| |||| ||||| ||| ||||||||||| |
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| T |
27515558 |
ataattactaatgggatatttagcttttgattgagggtctggttcatatc |
27515607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 27515345 - 27515413
Alignment:
| Q |
25 |
attgtaaaaacccatctgcaccctaccgttttcttccctcttggtaaagttacaagatcccaagtgttg |
93 |
Q |
| |
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||||||||||||||| ||||||| || | ||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
27515345 |
attgtaaaaacccatttgcaccccactggtttcttcccacttggtaaagtcacaatatcccaagtgttg |
27515413 |
T |
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