View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_14 (Length: 308)
Name: NF10437_1D_low_14
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_14 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 21934742 - 21934446
Alignment:
| Q |
12 |
atgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcggactggttgtcaagttcacaccatttgctccccatcacgacttcgacga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21934742 |
atgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcgggctggttgtcaaattcacaccatttgctccccatcatgacttcgacga |
21934643 |
T |
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| Q |
112 |
tgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtgga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21934642 |
tgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattaggtgagaaagacaccaagagtgga |
21934543 |
T |
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| Q |
212 |
agaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21934542 |
agaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataata |
21934446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 21370775 - 21370579
Alignment:
| Q |
86 |
tttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagat |
185 |
Q |
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||||||||||||||||| |||||| || ||| ||||||||||||| | | | | |||||||||||| | ||||| ||||||||||||||||| || |
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| T |
21370775 |
tttgctccccatcacgatgacgacgaggtgaggcttaacagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaat |
21370676 |
T |
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| Q |
186 |
tgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtaga |
282 |
Q |
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| T |
21370675 |
tgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcctttggtaacttctttaagattgtaga |
21370579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 21403940 - 21403822
Alignment:
| Q |
161 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
260 |
Q |
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|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
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| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
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| Q |
261 |
gtaacttctttaggattgt |
279 |
Q |
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||||||||||||||||||| |
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| T |
21403840 |
gtaacttctttaggattgt |
21403822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 21798432 - 21798314
Alignment:
| Q |
161 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
260 |
Q |
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|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
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| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
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| Q |
261 |
gtaacttctttaggattgt |
279 |
Q |
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||||||||||||||||||| |
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| T |
21798332 |
gtaacttctttaggattgt |
21798314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 33990 - 34106
Alignment:
| Q |
107 |
gacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaaga |
206 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| | | || ||||||||| || |||||||| ||||||||||| |||||||| | | || |
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| T |
33990 |
gacgatgttaggcttaacagagacttgagagtaacattcctaacctccacaagttgtgggcagtcaacagactggagattgggcgagaaagatgcaacga |
34089 |
T |
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| Q |
207 |
gtggaagaaggttgatt |
223 |
Q |
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||||||| ||||||||| |
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| T |
34090 |
gtggaaggaggttgatt |
34106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 15145 - 14988
Alignment:
| Q |
74 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
173 |
Q |
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|||||||| || |||||||| ||||| || ||| |||||||| ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
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| T |
15145 |
aagttcactccttttgctcctcatcatgatgatgacaatgttaggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
15046 |
T |
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| Q |
174 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgg |
231 |
Q |
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|||| |||||||| ||||||||||| | | |||||||| || |||||| ||||||| |
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| T |
15045 |
cagactggagattaggtgagaaagatgctacaagtggaaggagattgattgtcactgg |
14988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 26150 - 25996
Alignment:
| Q |
74 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
173 |
Q |
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|||||||| || |||||||| ||||| || ||| ||||| || ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
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| T |
26150 |
aagttcactccttttgctcctcatcatgatgatgacaatgttgggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
26051 |
T |
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| Q |
174 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcac |
228 |
Q |
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|||| |||||||| ||||||||||| | | |||||||| ||||||||| |||| |
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| T |
26050 |
cagactggagattaggtgagaaagatgctacaagtggaaggaggttgattgtcac |
25996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 4286742 - 4286855
Alignment:
| Q |
110 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
209 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
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| T |
4286742 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4286841 |
T |
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| Q |
210 |
gaagaaggttgatt |
223 |
Q |
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|||| ||| ||||| |
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| T |
4286842 |
gaaggaggctgatt |
4286855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 4295213 - 4295326
Alignment:
| Q |
110 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
209 |
Q |
| |
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||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
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| T |
4295213 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4295312 |
T |
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| Q |
210 |
gaagaaggttgatt |
223 |
Q |
| |
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|||| ||| ||||| |
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| T |
4295313 |
gaaggaggctgatt |
4295326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 30902756 - 30902687
Alignment:
| Q |
148 |
agcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaagg |
217 |
Q |
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|||||| |||| |||||||||||| || ||||||| ||| ||||| | ||| || ||||||||||||||| |
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| T |
30902756 |
agcttcttcaatttgtgtacaatccactgaatggaaattaggtgatagagatactaagagtggaagaagg |
30902687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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