View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_15 (Length: 306)
Name: NF10437_1D_low_15
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_15 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 31418670 - 31418381
Alignment:
| Q |
20 |
atcagaatttgagattgctagatctacaaaagcgtacaagatgattctccagaatcttcctttcatatttgttggcaagtgtgatcgtttacagagtatt |
119 |
Q |
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| T |
31418670 |
atcagaatttgagattgctagatctacaaaagcgtacaagatgattctccagaatcttcctttcatatttgttggcaagtgtgatcgtttacagagtatt |
31418571 |
T |
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| Q |
120 |
gtggctattgtagccgaggcggcgaagcagagtttgaagaagaagggaatgccagttccgccatggaggagagtcgaatatgtcaaagcaaaatggctct |
219 |
Q |
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| T |
31418570 |
gtggctattgtatccgaggcggcgaagcagagtttgaagaagaagggaatgccagttccgccgtggaggagagtcgaatatgtcaaagcaaaatggctct |
31418471 |
T |
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| Q |
220 |
catcttacacacgaatgaatgtgaattcacagaatcag---aagatttcgaaggaaaattgtgttaccaagagttcgggcgaagaggaga |
306 |
Q |
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| T |
31418470 |
catcttacacacgaatgaatgtgaattcacagaatcagaagaagattttgaaggaaaattgtgttaccgagagttcgggcgaagaggaga |
31418381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 34098011 - 34097957
Alignment:
| Q |
135 |
gaggcggcgaagcagagtttgaagaagaagggaatgccagttccgccatggagga |
189 |
Q |
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| T |
34098011 |
gaggcggcgaagcagagtttgaagaagaaaggaatgcctgttccgccgtggagga |
34097957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 15287908 - 15287854
Alignment:
| Q |
135 |
gaggcggcgaagcagagtttgaagaagaagggaatgccagttccgccatggagga |
189 |
Q |
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| T |
15287908 |
gaggcggcgaagcagagtttgaagaagaaaggaatgcatgttccgccgtggagga |
15287854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 46899633 - 46899579
Alignment:
| Q |
135 |
gaggcggcgaagcagagtttgaagaagaagggaatgccagttccgccatggagga |
189 |
Q |
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| T |
46899633 |
gaggcgacgaagcagagtttgaagaagaaaggaatgaatgttccgccgtggagga |
46899579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 38476257 - 38476403
Alignment:
| Q |
20 |
atcagaatttgagattgctagatctacaaaagcgtacaagatgattctccagaatcttcctttcatatttgttggcaagtgtgatcgtttacagagtatt |
119 |
Q |
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||||||||||||||| ||| |||| || ||||| ||||| |||||||||| | ||||||| |||||||||| ||| ||||||| ||||| |||||| |
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| T |
38476257 |
atcagaatttgagatagctcgatcaaccaaagcttacaaagtgattctccaaacgcttccttatgtatttgttgggaagagtgatcggttacatagtatt |
38476356 |
T |
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| Q |
120 |
gtggctattgtagccgaggcggcgaagcagagtttgaagaagaaggg |
166 |
Q |
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| T |
38476357 |
gtagccatagcatctgaggcagcgaaacagagtttgaagaaaaaggg |
38476403 |
T |
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