View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_17 (Length: 298)

Name: NF10437_1D_low_17
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_17
NF10437_1D_low_17
[»] chr8 (9 HSPs)
chr8 (29-120)||(3917812-3917902)
chr8 (23-120)||(3923555-3923651)
chr8 (37-120)||(3926079-3926161)
chr8 (29-119)||(14099761-14099851)
chr8 (23-97)||(14101059-14101132)
chr8 (23-64)||(40462281-40462322)
chr8 (22-110)||(9755694-9755781)
chr8 (24-64)||(38980160-38980200)
chr8 (24-64)||(39011257-39011297)
[»] chr5 (5 HSPs)
chr5 (29-120)||(29875963-29876053)
chr5 (22-120)||(32953104-32953199)
chr5 (134-171)||(32953231-32953268)
chr5 (134-171)||(32958000-32958037)
chr5 (29-120)||(6376977-6377066)
[»] chr4 (19 HSPs)
chr4 (25-120)||(6866706-6866800)
chr4 (25-120)||(6872549-6872643)
chr4 (23-118)||(16314150-16314244)
chr4 (23-119)||(5169324-5169419)
chr4 (30-117)||(16312665-16312751)
chr4 (29-111)||(56083370-56083452)
chr4 (23-120)||(1997004-1997101)
chr4 (22-119)||(44353886-44353982)
chr4 (23-119)||(2751529-2751624)
chr4 (23-119)||(23506331-23506426)
chr4 (23-120)||(24686467-24686562)
chr4 (23-65)||(17288642-17288684)
chr4 (23-120)||(20674759-20674855)
chr4 (29-120)||(24127534-24127622)
chr4 (24-101)||(39661283-39661359)
chr4 (32-92)||(45550540-45550599)
chr4 (23-120)||(20673576-20673669)
chr4 (24-119)||(44355359-44355455)
chr4 (29-65)||(47861949-47861985)
[»] chr3 (12 HSPs)
chr3 (24-120)||(30034626-30034721)
chr3 (22-120)||(34799875-34799972)
chr3 (24-120)||(34801338-34801433)
chr3 (23-118)||(36438722-36438816)
chr3 (23-120)||(37086688-37086784)
chr3 (24-120)||(37085425-37085519)
chr3 (23-119)||(39606584-39606680)
chr3 (23-117)||(36437225-36437318)
chr3 (29-106)||(30040501-30040577)
chr3 (31-120)||(48537869-48537957)
chr3 (50-118)||(20285626-20285695)
chr3 (23-63)||(11151596-11151636)
[»] scaffold0049 (4 HSPs)
scaffold0049 (25-120)||(3364-3458)
scaffold0049 (25-120)||(1145-1240)
scaffold0049 (29-92)||(3898-3960)
scaffold0049 (23-61)||(397-435)
[»] chr1 (12 HSPs)
chr1 (29-120)||(49383038-49383132)
chr1 (24-119)||(42097338-42097432)
chr1 (23-92)||(21747954-21748022)
chr1 (23-120)||(35713642-35713738)
chr1 (23-120)||(42098677-42098773)
chr1 (31-111)||(13970957-13971037)
chr1 (23-119)||(17240728-17240823)
chr1 (29-120)||(43402279-43402367)
chr1 (29-119)||(9008777-9008865)
chr1 (24-120)||(9011004-9011100)
chr1 (29-120)||(24302952-24303039)
chr1 (74-110)||(36919656-36919692)
[»] chr7 (6 HSPs)
chr7 (24-120)||(19628127-19628224)
chr7 (23-116)||(47578533-47578628)
chr7 (23-120)||(21261991-21262088)
chr7 (23-119)||(5769254-5769349)
chr7 (24-92)||(15814445-15814513)
chr7 (37-120)||(23526714-23526796)
[»] chr6 (9 HSPs)
chr6 (23-118)||(25482159-25482253)
chr6 (23-120)||(9305632-9305729)
chr6 (29-118)||(25483349-25483437)
chr6 (22-117)||(5858908-5859002)
chr6 (23-120)||(32146035-32146135)
chr6 (23-120)||(21383767-21383863)
chr6 (29-65)||(12603953-12603989)
chr6 (22-98)||(35223142-35223217)
chr6 (74-119)||(22359225-22359270)
[»] chr2 (3 HSPs)
chr2 (74-120)||(18751426-18751472)
chr2 (32-120)||(25648640-25648731)
chr2 (38-103)||(18750229-18750293)
[»] scaffold0484 (1 HSPs)
scaffold0484 (29-118)||(11552-11640)
[»] scaffold0471 (1 HSPs)
scaffold0471 (29-120)||(12140-12228)
[»] scaffold0262 (1 HSPs)
scaffold0262 (22-97)||(2770-2842)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 3917812 - 3917902
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||||| ||| |||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3917812 accccctgccatttgggcgacatttggtttacccccctgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 3917902  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 3923651 - 3923555
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3923651 cttttacccccctaccatttgggcgacatttggtttacccccctgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 3923555  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 3926079 - 3926161
Alignment:
Q  37 ccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||| ||| |||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3926079 ccatttgggcgacatttggtttacccccctgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 3926161  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 14099761 - 14099851
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    ||||||||||||||||| | ||||||||||||||||  |   || |||||||||| |||||||| | | ||| || ||||||| |||||||    
T  14099761 accccctgccatttgggggtcttttggtttaccccctatggaaaaaaaaaacttggagattcccccctataaaataaagattctttggttt 14099851  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 14101132 - 14101059
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttg 97  Q
    |||||| ||||||||||| || | | ||||||||||||||||| ||| || |||||||||| |||||||| ||||    
T  14101132 cttttacccccctgccatatgagcgtcttttggtttacccccc-taacaaaaaaaaacttggagattcccccttg 14101059  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 40462281 - 40462322
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccc 64  Q
    |||||| ||||||||||| |||| ||||||||||||||||||    
T  40462281 cttttacccccctgccatatgggtgacttttggtttaccccc 40462322  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 9755694 - 9755781
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagatt 110  Q
    ||||||| |||||||||||||||| | |||||||| |||||||| ||| || || ||||||  | |||||| ||| ||| |||||||||    
T  9755694 acttttacccccctgccatttgggggtcttttggtatacccccc-taacaaaaataaactttgaaattcccccttataaaatgaagatt 9755781  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 38980200 - 38980160
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccc 64  Q
    |||| |||||||| |||||||||| ||||||||||||||||    
T  38980200 tttttaccccctgtcatttgggagtcttttggtttaccccc 38980160  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39011297 - 39011257
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccc 64  Q
    |||| |||||||| |||||||||| ||||||||||||||||    
T  39011297 tttttaccccctgtcatttgggagtcttttggtttaccccc 39011257  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 29875963 - 29876053
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||||| ||| |||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29875963 accccctgccatttgggcgacatttggtttacccccctgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 29876053  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 32953104 - 32953199
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||| |||||||||||||||  |||||||| ||||||||  ||   || |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  32953104 acttttacccccctgccatttggacgacttttgatttaccccttgt---aaaaaaaaacttgtagatttccacttgtaatatgaagattccttggttta 32953199  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 32953231 - 32953268
Alignment:
Q  134 gactggataaaaatgatgacgtggcttgccgactaggt 171  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  32953231 gactggataaaaatggtgacgtggcttgctgactaggt 32953268  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 32958037 - 32958000
Alignment:
Q  134 gactggataaaaatgatgacgtggcttgccgactaggt 171  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  32958037 gactggataaaaatgttgacgtggcttgctgactaggt 32958000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 6377066 - 6376977
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||||| |||||||  |  |||||||||||||||  || ||| ||||| |||| |||||||| |||||||| | ||||||| ||||||||    
T  6377066 accccctgtcatttggaggtattttggtttaccccc--taggaaaaaaaaccttggagattccctcttgtaatttaaagattctttggttta 6376977  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 6866706 - 6866800
Alignment:
Q  25 tttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| ||||||||||||||||  ||||||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6866706 tttacccccctgccatttggggtacttttggtttacccccccacaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 6866800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 6872643 - 6872549
Alignment:
Q  25 tttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| ||||||||||||||||  ||||||||||||||||||   | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6872643 tttacccccctgccatttggggtacttttggtttacccccccgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 6872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 16314244 - 16314150
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| |||||||| ||||||| || ||||||| ||||||    
T  16314244 cttttacccccctgccatttgggggtcttttggtttacccccc-tacgaaaaaaaaacttggagattcccccttgtaaaataaagattctttggtt 16314150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 5169324 - 5169419
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| | ||||||||||||||||| ||  || |||||||||| |||||||| |||| || |||||||||| |||||||    
T  5169324 cttttacccccctgccatttgggcgtcttttggtttacccccc-tacaaaaaaaaaacttggagattcccccttgcaaaatgaagattctttggttt 5169419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 16312665 - 16312751
Alignment:
Q  30 ccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggt 117  Q
    |||||||||||||||| |  |||||||||||||||| || ||| |||||||||| |||||||| | |||||||| ||||||| |||||    
T  16312665 ccccctgccatttgggggttttttggtttacccccc-tacgaaaaaaaaacttggagattcccccctgtaatataaagattccttggt 16312751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 56083370 - 56083452
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattc 111  Q
    ||||||||||||||||| | |||||||| ||||||||  |  || |||||||||| |||||||| ||||||| ||||||||||    
T  56083370 accccctgccatttgggggtcttttggtatacccccctaacaaaaaaaaaacttggagattcccccttgtaaaatgaagattc 56083452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 1997101 - 1997004
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| ||||||||||||| || | |||||||| ||||||||  |  || |||||||||| |||||||| ||||||| ||| |||||| ||||||||    
T  1997101 cttttacccccctgccatttaggggtcttttggtatacccccctgacaaaaaaaaaacttggagattcccccttgtaaaatgtagattctttggttta 1997004  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 44353886 - 44353982
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| |   || ||||||||||||||||||| || | ||| | ||||||| |||||||    
T  44353886 acttttacccccctgccatttgggggacttttggtatacccccc-tgtcaaaaaaaaacttgtagattccccctcgaaatttaaagattctttggttt 44353982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 2751529 - 2751624
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| |||||||||| |||||||| |   || ||||||||||||||||||| || | ||| | ||||||| |||||||    
T  2751529 cttttatccccctgccatttgggggacttttggtatacccccc-tgtcaaaaaaaaacttgtagattccccctcgaaatttaaagattctttggttt 2751624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 23506426 - 23506331
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| | ||||||||||||||||| |   || |||||||||| |||||||| |||||||| |  |||||| |||||||    
T  23506426 cttttacccccctgccatttgggggtcttttggtttacccccc-tgcaaaaaaaaaacttggagattcccccttgtaatttatagattctttggttt 23506331  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 24686562 - 24686467
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttac-cccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||| |||||| ||  ||||||||||||| |||| ||   || ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  24686562 cttttacccccctaccatttagggaacttttggtttacacccctgt---aaaaaaaaacttgtagattcccacttgtaatatacagattccttggttta 24686467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 17288642 - 17288684
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacccccc 65  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  17288642 cttttacccccctgccatttgggggacttttggtttacccccc 17288684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 20674855 - 20674759
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| ||||||||||||||||||| ||||||||||||| || || | | |||||||| | | |||||| | |||||| | ||||||| ||||||||    
T  20674855 cttttacccccctgccatttgggagatttttggtttaccctcc-tatggaaaaaaaactcgaatattcccccctgtaatttaaagattctttggttta 20674759  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 24127622 - 24127534
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||  | || ||||||||||||||| |||| ||   |||||||||||||||  ||||||||||| ||||||  ||||||||    
T  24127622 accccctgccatttaagggatttttggtttaccccctgtaaaaa---aaaacttgtagattcttacttgtaatataaagatttcttggttta 24127534  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 39661359 - 39661283
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaat 101  Q
    |||||||||||||||||||||| | |||||||||||| |||| || ||| |||||||||| ||| |||| | ||||||    
T  39661359 ttttaaccccctgccatttgggggtcttttggtttac-ccccatatgaaaaaaaaacttggagaatcccccatgtaat 39661283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 45550599 - 45550540
Alignment:
Q  32 ccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattccc 92  Q
    ||||| |||||||||| |||||||||||||||| || |||| |||||||||| ||||||||    
T  45550599 ccctgtcatttgggagtcttttggtttaccccctgt-agaaaaaaaaacttggagattccc 45550540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 20673576 - 20673669
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||||||||||||| | ||||||||||||||||  || |  ||||||||||| |||||||| | |||||| | ||||||| ||| ||||    
T  20673576 cttttacccccctgccatttgggtgtcttttggtttaccccc--tatg--gaaaaaacttggagattcccccctgtaatttaaagattctttgcttta 20673669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 44355455 - 44355359
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttacccccc-gtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||| ||||||||||||||||  | |||||||| |||  ||| |||| || ||||||||||||||||||| ||||  ||  |||||||| |||||||    
T  44355455 tttttaccccctgccatttggaggtcttttggtatacatccctgtaaaaaaaaaaaacttgtagattcccccttgctattagaagattctttggttt 44355359  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 47861949 - 47861985
Alignment:
Q  29 accccctgccatttgggagacttttggtttacccccc 65  Q
    ||||||||||||||||| | |||||||||||||||||    
T  47861949 accccctgccatttgggggtcttttggtttacccccc 47861985  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 30034626 - 30034721
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||| |||||||||||||||| ||| |||||||||||||||   | || |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30034626 ttttacccccctgccatttgggcgacatttggtttacccccctgcaaaaaaaaaaa-ttgtagattcccacttgtaatatgaagattccttggttta 30034721  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 34799875 - 34799972
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| |||||||| |||| || |||||||||| ||||||||    
T  34799875 acttttacccccctgccatttgggggtcttttggtttacccccc-tatgaaaaaaaaacttggagattcccccttgcaaaatgaagattctttggttta 34799972  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 34801433 - 34801338
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| |||||||| ||||||| || ||||||| ||||||||    
T  34801433 ttttacccccctgccatttgggggtcttttggtttacccccc-tatgaaaaaaaaacttggagattcccccttgtaaaataaagattctttggttta 34801338  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 36438816 - 36438722
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| |||||||| | ||||| || ||||||| ||||||    
T  36438816 cttttacccccctgccatttgggggtcttttggtttacccccc-tacgaaaaaaaaacttggagattcccccctgtaaaataaagattctttggtt 36438722  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 37086784 - 37086688
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||||||||||| | | ||||||||||||||||| || ||| |||||||||| |||||||| | ||||| || ||||||| ||||||||    
T  37086784 cttttacccccctgccatttgagcgtcttttggtttacccccc-tatgaaaaaaaaacttggagattcccccctgtaaaataaagattctttggttta 37086688  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 37085425 - 37085519
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| |||||||| | ||||| || ||||||| ||||||||    
T  37085425 ttttatccccctgccatttgggcgtcttttggtttacccccc-tatgaa-aaaaaacttggagattcccccctgtaaaataaagattctttggttta 37085519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 39606680 - 39606584
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| ||||||||||||||| || ||||||||||| |||||   | || |||||||||| |||||||| |||| || |||||||||| |||||||    
T  39606680 cttttacccccctgccatttggaagtcttttggtttatccccctacaaaaaaaaaaacttggagattcccccttgcaaaatgaagattctttggttt 39606584  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 36437225 - 36437318
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggt 117  Q
    |||||| |||||||||||||||| |  |||||||||||||||| ||  || |||||||||| |||||||| | |||||||| ||||||| |||||    
T  36437225 cttttacccccctgccatttgggggttttttggtttacccccc-tactaaaaaaaaacttggagattcccccctgtaatataaagattccttggt 36437318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 30040577 - 30040501
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaa 106  Q
    ||||||||||||||||| ||| |||||||||||||||   | || |||||  ||||||||||||||||||||||||||    
T  30040577 accccctgccatttgggcgacatttggtttacccccctgcaaaa-aaaaattttgtagattcccacttgtaatatgaa 30040501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 48537869 - 48537957
Alignment:
Q  31 cccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||| | ||||||||||||||||  | | || |||||||||| |||||||| ||||||| || ||||||| ||||||||    
T  48537869 cccctgccatttgggggtcttttggtttaccccctatgaaaaaaaaaaacttggagattccc-cttgtaaaataaagattctttggttta 48537957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 20285626 - 20285695
Alignment:
Q  50 ttttggtttaccccccgtaagaagaaaaaa-cttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    ||||||| ||||| |||||| || |||||| |||| ||||||||||||| || |||||||||| ||||||    
T  20285626 ttttggtataccctccgtaaaaaaaaaaaaacttggagattcccacttgaaacatgaagattctttggtt 20285695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 11151636 - 11151596
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacccc 63  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  11151636 cttttacccccctaccatttgggggacttttggtttacccc 11151596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 3458 - 3364
Alignment:
Q  25 tttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| |||||||||||||||| ||| ||||||||||||||    | || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3458 tttacccccctgccatttgggcgacatttggtttacccccttgcaaaa-aaaaaacttgtagattcccacttgtaatatgaagattccttggttta 3364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 1145 - 1240
Alignment:
Q  25 tttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| |||||||||||||||| ||| |||||||||| || |   | || ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  1145 tttacccccctgccatttgggcgacatttggtttacacctctgcaaaaaaaaaaacttgtcgattcccacttgtaatatgaagattccttggttta 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 3960 - 3898
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattccc 92  Q
    ||||||||||||||||| ||||||||||||| |||| ||  ||| |||||||||| ||||||||    
T  3960 accccctgccatttgggggacttttggtttatcccctgt-ggaaaaaaaaacttggagattccc 3898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 397 - 435
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacc 61  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  397 cttttacccccctgccatttgggggacttttggtttacc 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 49383038 - 49383132
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaa---aacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||||||||||| || |||||||||||||||||| |||| || ||||   |||||||||||||||||||||||||| ||||||  ||||||||    
T  49383038 accccctgccatttaggggacttttggtttaccccctgtaaaaaaaaaaaaaaacttgtagattcccacttgtaatataaagattacttggttta 49383132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 42097338 - 42097432
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    ||||| |||||||||||||||| | ||||||||||||||||| || | | |||||| ||| |||||||| |||||||| | ||||||| |||||||    
T  42097338 ttttacccccctgccatttgggggtcttttggtttacccccc-tatggaaaaaaaaattggagattcccccttgtaatttaaagattctttggttt 42097432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 21747954 - 21748022
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattccc 92  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||| |||||||||| ||||||||    
T  21747954 cttttacccccctgccatttgggggtcttttggtttacccccc-tatgaaaaaaaaacttggagattccc 21748022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 35713738 - 35713642
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| ||||||||||| |||| | |||||||| || ||||| ||  || |||||||||| |||||||| ||||||| |||||||||| ||||||||    
T  35713738 cttttacccccctgccatatgggggtcttttggtata-cccccatatcaaaaaaaaacttggagattcccccttgtaaaatgaagattctttggttta 35713642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 42098773 - 42098677
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||||||||||||| | ||||||||||| ||||| || ||| |||||||||| |||||||| | ||||| || ||||||| ||| ||||    
T  42098773 cttttacccccctgccatttgggggtcttttggtttatccccc-tatgaaaaaaaaacttggagattcccccatgtaaaataaagattctttgattta 42098677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 13971037 - 13970957
Alignment:
Q  31 cccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattc 111  Q
    ||||||||||||||||| ||||||||||||||||    | || |||||||||| ||||||||  ||| || ||||||||||    
T  13971037 cccctgccatttgggagtcttttggtttacccccatataaaaaaaaaaacttggagattcccctttgcaaaatgaagattc 13970957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 17240728 - 17240823
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| | |||||||| |||||||| |   || ||||||||||||||||||| ||||  ||  |||||||| |||||||    
T  17240728 cttttacccccctgccatttgggggtcttttggtatacccccc-tgtcaaaaaaaaacttgtagattcccccttgccattagaagattctttggttt 17240823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 43402279 - 43402367
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||||| | ||||||||||||||||  || ||| |||||||||| ||||||||   ||||| || ||||||| ||||||||    
T  43402279 accccctgccatttgggggtcttttggtttaccccc--tatgaa-aaaaaacttggagattcccctatgtaaaataaagattctttggttta 43402367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 9008777 - 9008865
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    ||||||||||||||||| | |||||||| ||||||| ||   || ||||||||||||||||||| ||||  ||  |||||||| |||||||    
T  9008777 accccctgccatttgggggtcttttggtataccccctgt--caaaaaaaaacttgtagattcccccttgccattagaagattctttggttt 9008865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 9011100 - 9011004
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttacccccc-gtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| ||||||||||||||||| |  ||||||| |||||||| |||| || |||||||||||||||| || ||||  ||  |||||||| ||||||||    
T  9011100 tttttaccccctgccatttggg-gctttttggtatacccccctgtaaaaaaaaaaaacttgtagatttccccttgccattagaagattctttggttta 9011004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 24302952 - 24303039
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||||| | |||||||||||||||   || ||| |||||||||| |||||||| |||| |||  |||||||| ||| ||||    
T  24302952 accccctgccatttggg-gtcttttggtttacccc---tatgaaaaaaaaacttggagattcccccttgcaattagaagattctttgattta 24303039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 36919692 - 36919656
Alignment:
Q  74 aaaaaacttgtagattcccacttgtaatatgaagatt 110  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  36919692 aaaaaacttgtagattctcacttgtaatataaagatt 36919656  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 19628224 - 19628127
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaag--aaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || ||||  |||||||||| |||||||| ||||||| || ||||||  ||||||||    
T  19628224 tttttaccccctgccatttgggagtcttttggtttacccccc-tatgaagaaaaaaaacttggagattcccccttgtaaaataaagattatttggttta 19628127  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 47578628 - 47578533
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacccccc--gtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattgg 116  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    || || |||||||||| |||||||| ||| ||| |||||||||| ||||    
T  47578628 cttttacccccctgccatttgggagacttttggtatacccccctataaaaaaaaaaaaacttggagattcccccttttaaaatgaagattctttgg 47578533  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 21261991 - 21262088
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| ||||||||||||| || | |||||||| ||||||||   | || |||||||||| |||||||| ||||||| ||| |||||| ||||||||    
T  21261991 cttttacccccctgccatttaggggtcttttggtatacccccctgcaaaaaaaaaaacttggagattcccccttgtaaaatgtagattctttggttta 21262088  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 5769349 - 5769254
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| | |||||||| |||||||| |   || ||||||||||||||||||| ||||  ||  |||||||| |||||||    
T  5769349 cttttacccccctgccatttgggggtcttttggtatacccccc-tgtcaaaaaaaaacttgtagattcccccttgccattagaagattctttggttt 5769254  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 15814445 - 15814513
Alignment:
Q  24 ttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattccc 92  Q
    |||| |||||||||||| |||| | |||||||| |||||||  ||| || |||||||||||||||||||    
T  15814445 tttttaccccctgccatatgggcgtcttttggtataccccctataaaaaaaaaaaacttgtagattccc 15814513  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 23526796 - 23526714
Alignment:
Q  37 ccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||||||||||||||||| ||||||| |  | || |||||||||| |||||||| | | ||| |||||||||| ||||||||    
T  23526796 ccatttgggagacttttggtataccccctggca-aaaaaaaaacttggagattcccccctataaaatgaagattctttggttta 23526714  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 25482159 - 25482253
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    |||||| ||||||||||||| |||| ||||||||||||||||| ||  || |||||||||| |||||||| |||| || |||||||||| ||||||    
T  25482159 cttttacccccctgccatttaggagtcttttggtttacccccc-tatcaaaaaaaaacttggagattcccccttgcaaaatgaagattccttggtt 25482253  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 9305632 - 9305729
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacccccc-gtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| |||||||| |||| |||||||||||||||||| ||| |||| || |||  | ||||||||||||||||||||||| ||||||| ||||||||    
T  9305632 cttttacccccctgctatttaggagacttttggtttacctccctgtaaaaaaaaatca-ttgtagattcccacttgtaatataaagattccttggttta 9305729  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 25483437 - 25483349
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    ||||||||||||||||||| ||||||| ||||||||| ||  |  ||||||||||||||||||| |||| || |||||||||| ||||||    
T  25483437 accccctgccatttgggagtcttttggattacccccc-tatcataaaaaaacttgtagattcccccttgcaaaatgaagattctttggtt 25483349  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 5858908 - 5859002
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggt 117  Q
    ||||||| |||||||||||||||| |  ||||||||||||| || || ||| |||||||||| |||||||| | |||||||| ||||||| |||||    
T  5858908 acttttacccccctgccatttgggggttttttggtttacccacc-tacgaaaaaaaaacttggagattccctcctgtaatataaagattccttggt 5859002  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 32146135 - 32146035
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttacc-ccccgtaagaag--aaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||| |||||||||||||||| | ||||||||||||| |||| || ||||  |||||||||| ||||| || | ||||| || |||||||||||||||    
T  32146135 cttttatccccctgccatttgggggtcttttggtttacccccccctatgaagaaaaaaaacttggagatttccccctgtaaaataaagattcattggttt 32146036  T
Q  120 a 120  Q
    |    
T  32146035 a 32146035  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 21383863 - 21383767
Alignment:
Q  23 cttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||| ||||||||||||| || | |||||||| |||||||| |   || |||||||||| |||||||| ||||||| ||| |||||| ||||||||    
T  21383863 cttttacccccctgccatttaggggtcttttggtatacccccc-tgcaaaaaaaaaacttggagattcccccttgtaaaatgtagattctttggttta 21383767  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 12603953 - 12603989
Alignment:
Q  29 accccctgccatttgggagacttttggtttacccccc 65  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12603953 accccctgccatttgggagtcttttggtttacccccc 12603989  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 35223142 - 35223217
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgt 98  Q
    ||||||| |||||||||||||||  |  |||||||||||||||| ||| || |||||||||| |||||||| |||||    
T  35223142 acttttacccccctgccatttggcggtgttttggtttacccccc-taacaaaaaaaaacttggagattcccccttgt 35223217  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 22359225 - 22359270
Alignment:
Q  74 aaaaaacttgtagattcccacttgtaatatgaagattcattggttt 119  Q
    |||||||||| |||||||| ||| |||| |||||||||||||||||    
T  22359225 aaaaaacttgaagattcccccttataatttgaagattcattggttt 22359270  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 18751472 - 18751426
Alignment:
Q  74 aaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  18751472 aaaaaacttgtagattcccacttgtaatataaagattccttggttta 18751426  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 25648640 - 25648731
Alignment:
Q  32 ccctgccatttgggagacttttggtttaccccccgt---aagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||| |||||||||||||||| |||  ||   || || |||||| |||||||||| |||||||||||| ||||||| ||||||||    
T  25648640 ccctgccatttaggagacttttggtttatcccatgtaaaaaaaaaaaaaaaattgtagattctcacttgtaatataaagattccttggttta 25648731  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 18750229 - 18750293
Alignment:
Q  38 catttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatat 103  Q
    ||||||||| ||||||| ||||||||| | || || ||||||||||||||||||||| ||||||||    
T  18750229 catttgggaaacttttgatttaccccctgcaaaaa-aaaaaacttgtagattcccacctgtaatat 18750293  T

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Target: scaffold0484 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 11552 - 11640
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggtt 118  Q
    ||||||||||||||||||| ||||||| ||||||||  | | || |||||||||||||||| || |||| || |||||||||| ||||||    
T  11552 accccctgccatttgggagtcttttggattaccccctatcataa-aaaaaacttgtagatttccccttgcaaaatgaagattccttggtt 11640  T

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Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 12228 - 12140
Alignment:
Q  29 accccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttgtaatatgaagattcattggttta 120  Q
    ||||||||||||||  | || ||||||||||||||| |||| ||   |||||||||||||||  ||||||||||| ||||||  ||||||||    
T  12228 accccctgccatttaagggatttttggtttaccccctgtaaaaa---aaaacttgtagattcttacttgtaatataaagatttcttggttta 12140  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 2770 - 2842
Alignment:
Q  22 acttttaaccccctgccatttgggagacttttggtttaccccccgtaagaagaaaaaacttgtagattcccacttg 97  Q
    ||||||| ||||||| ||| |||| ||||||||||||||||||| || ||  |||||||||| |||||||| ||||    
T  2770 acttttatccccctgtcatatgggtgacttttggtttacccccc-tagga--aaaaaacttggagattcccccttg 2842  T

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