View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_19 (Length: 285)

Name: NF10437_1D_low_19
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_19
NF10437_1D_low_19
[»] chr8 (1 HSPs)
chr8 (1-285)||(931982-932266)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 931982 - 932266
Alignment:
Q  1 ggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaagagcttgcggcactcaattatacaaagcagcttgatttttcacactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931982 ggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaagagcttgcggcactcaattatacaaagcagcttgatttttcacactt 932081  T
Q  101 aacattagatggttccggcatcaaatcggtacctatttctggtcggatgcataggaataaaattatgaagaggnnnnnnngagtaagagttgaagagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  932082 aacattagatggttccggcatcaaatcggtacctatttctggtcggatgcataggaataaaattatgaagaggaaaaaaagagtaagagttgaagagaaa 932181  T
Q  201 tgtgatttagcatcacacatgtctaaccatactttattctcctactatggtatgccatttccttatatatttttgtttttaaaat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  932182 tgtgatttagcatcacacatgtctaaccatactttattctcctactatggtatgccatttccttatatatttttgtttttaaaat 932266  T

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