View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_2 (Length: 591)

Name: NF10437_1D_low_2
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_2
NF10437_1D_low_2
[»] chr8 (8 HSPs)
chr8 (1-446)||(21934724-21935169)
chr8 (448-499)||(16723683-16723734)
chr8 (448-514)||(9044186-9044252)
chr8 (446-499)||(36697680-36697733)
chr8 (448-516)||(28540347-28540415)
chr8 (444-493)||(20105077-20105127)
chr8 (445-487)||(43306683-43306725)
chr8 (450-486)||(25230429-25230465)
[»] chr3 (17 HSPs)
chr3 (448-570)||(48058275-48058397)
chr3 (444-493)||(31595131-31595180)
chr3 (444-493)||(31595863-31595912)
chr3 (452-500)||(48058955-48059003)
chr3 (451-499)||(29749332-29749380)
chr3 (456-500)||(47393901-47393945)
chr3 (444-492)||(54516958-54517006)
chr3 (454-516)||(33565363-33565426)
chr3 (448-515)||(36244131-36244198)
chr3 (448-499)||(37727629-37727679)
chr3 (461-500)||(55058528-55058567)
chr3 (454-536)||(24515886-24515968)
chr3 (448-498)||(40934828-40934878)
chr3 (442-483)||(45082214-45082256)
chr3 (450-499)||(103752-103801)
chr3 (447-483)||(33240196-33240232)
chr3 (456-516)||(54524668-54524728)
[»] chr1 (10 HSPs)
chr1 (448-578)||(50545976-50546106)
chr1 (448-500)||(2071468-2071520)
chr1 (444-490)||(2070783-2070829)
chr1 (448-492)||(19790840-19790884)
chr1 (446-499)||(15601465-15601518)
chr1 (456-500)||(36391351-36391395)
chr1 (452-490)||(39869997-39870035)
chr1 (454-536)||(44770342-44770424)
chr1 (470-499)||(12644874-12644903)
chr1 (454-493)||(28764408-28764448)
[»] scaffold0006 (3 HSPs)
scaffold0006 (447-578)||(223806-223937)
scaffold0006 (511-578)||(224422-224489)
scaffold0006 (507-535)||(224484-224512)
[»] chr5 (13 HSPs)
chr5 (448-516)||(33574006-33574074)
chr5 (447-499)||(35424265-35424317)
chr5 (448-500)||(14098496-14098548)
chr5 (448-514)||(10470827-10470894)
chr5 (447-486)||(42655798-42655837)
chr5 (450-516)||(18861893-18861958)
chr5 (454-499)||(33574133-33574179)
chr5 (447-513)||(42654128-42654194)
chr5 (450-493)||(10470062-10470105)
chr5 (454-536)||(11448541-11448623)
chr5 (448-486)||(18862701-18862739)
chr5 (454-493)||(4084773-4084813)
chr5 (444-490)||(43512325-43512373)
[»] chr7 (6 HSPs)
chr7 (444-495)||(19068461-19068512)
chr7 (446-514)||(45432240-45432309)
chr7 (456-500)||(43448515-43448559)
chr7 (454-516)||(42417441-42417504)
chr7 (448-493)||(45432966-45433011)
chr7 (454-493)||(42418224-42418264)
[»] chr4 (11 HSPs)
chr4 (486-529)||(22406422-22406465)
chr4 (448-500)||(19638103-19638155)
chr4 (456-499)||(49574741-49574784)
chr4 (454-516)||(50186043-50186106)
chr4 (451-509)||(23531092-23531150)
chr4 (448-494)||(43428476-43428522)
chr4 (444-516)||(17736577-17736649)
chr4 (448-516)||(21436558-21436626)
chr4 (448-516)||(29881578-29881645)
chr4 (454-493)||(50185283-50185323)
chr4 (448-483)||(56295234-56295270)
[»] chr6 (7 HSPs)
chr6 (448-500)||(20508611-20508663)
chr6 (444-494)||(15997537-15997587)
chr6 (444-516)||(29344625-29344696)
chr6 (456-494)||(4279094-4279132)
chr6 (456-494)||(4284351-4284389)
chr6 (447-493)||(18970658-18970704)
chr6 (447-516)||(20756389-20756458)
[»] scaffold0159 (1 HSPs)
scaffold0159 (448-515)||(28154-28221)
[»] chr2 (5 HSPs)
chr2 (452-514)||(34237981-34238044)
chr2 (456-494)||(30784884-30784922)
chr2 (450-491)||(25616852-25616893)
chr2 (448-493)||(30266321-30266366)
chr2 (448-516)||(38799234-38799301)
[»] scaffold1370 (2 HSPs)
scaffold1370 (448-493)||(202-247)
scaffold1370 (444-500)||(910-965)
[»] scaffold0285 (1 HSPs)
scaffold0285 (444-493)||(17542-17591)
[»] scaffold0025 (1 HSPs)
scaffold0025 (456-500)||(150593-150636)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 21934724 - 21935169
Alignment:
Q  1 tgtaaagggcatgattcatttctgctgaccatagtggaacgtcctcctttgtttgtgataactggacggatgaagtattcttcgtcaccttcaacgggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21934724 tgtaaagggcatgattcatttctgctgaccatagtggaacgtcctcctttgtttgtgataactggacggatgaagtattcttcgtcgccttcaacgggtt 21934823  T
Q  101 ctccgactgtgtccaagacaaactgagctgttgttgttgtcgttataaagagacacacatgagcaagaataatgagggttctagtagataatctcattga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21934824 ctccgactgtgtccaagacaaactgagctattgttgttgtcgttataaagagacacacatgagcaagaataatgagggttctaatagataatctcattga 21934923  T
Q  201 catggtttattatttgttagatgtaacttgtaatgtaataacttggcttacactcaatggctttctgggttttgttactaggctaagtatttatagaact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21934924 catggtttattatttgttagatgtaacttgtaatgtaataactaggcttacactcaatggctttatgggttttgttactaggctaagtatttatagaact 21935023  T
Q  301 gtgatacatgcacttaaaagtttgtaatttttatatagaccgaaaagtgtaattatagtataaatcaacgattgttctnnnnnnnttattgtaaaatttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||       |||||||||||||||    
T  21935024 gtgatacatgcacttaaaagtttgtaatttttatatagaccgaaaagtgtaattataatataaatcaatgattgttctaaaataattattgtaaaatttt 21935123  T
Q  401 aacaaaattgtattgtagttgttaaatacttaaatttatgataata 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21935124 aacaaaattgtattgtagttgttaaatacttaaatttatgataata 21935169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 499
Target Start/End: Original strand, 16723683 - 16723734
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  16723683 agggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaat 16723734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 514
Target Start/End: Original strand, 9044186 - 9044252
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagatt 514  Q
    ||||||| | || ||||| ||||||| |||||||||||||||||||| |||| ||| ||||||||||    
T  9044186 agggcattttaaatgagatgactttttaaatgagagggtgagaggatcaaatattgaccattagatt 9044252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 36697680 - 36697733
Alignment:
Q  446 agagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    ||||| ||| |||| ||||||||||||| ||||||||||||||||||| |||||    
T  36697680 agaggacatttcaaatgagaggactttttaaatgagagggtgagaggagtaaat 36697733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 28540415 - 28540347
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||| |||| |||||||||||||||||||||||| |||||| || ||||  || ||||| ||||||    
T  28540415 agggcatttcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaa 28540347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 20105127 - 20105077
Alignment:
Q  444 atagagggcatatcaagtgagaggact-tttaaaatgagagggtgagagga 493  Q
    |||||||||||||||||||||||||||  ||| ||||||||| ||||||||    
T  20105127 atagagggcatatcaagtgagaggactagttataatgagaggatgagagga 20105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 43306683 - 43306725
Alignment:
Q  445 tagagggcatatcaagtgagaggacttttaaaatgagagggtg 487  Q
    |||||||||| |||| |||||||| ||||||||||||||||||    
T  43306683 tagagggcatttcaaatgagaggatttttaaaatgagagggtg 43306725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 25230465 - 25230429
Alignment:
Q  450 ggcatatcaagtgagaggacttttaaaatgagagggt 486  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  25230465 ggcatctcaagtgagagggcttttaaaatgagagggt 25230429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 448 - 570
Target Start/End: Original strand, 48058275 - 48058397
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaagtagtcataaa 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48058275 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaactgtcaggattaaagtagtcataaa 48058374  T
Q  548 tattgcaagtgcacgagatcact 570  Q
    |||||||||||||||||||||||    
T  48058375 tattgcaagtgcacgagatcact 48058397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 31595131 - 31595180
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  31595131 atagagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 31595180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 31595912 - 31595863
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  31595912 atagagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 31595863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 48059003 - 48058955
Alignment:
Q  452 catatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  48059003 catatcaagtaagaggaattttaaaatgagagggtgagaggattaaatc 48058955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 29749380 - 29749332
Alignment:
Q  451 gcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    |||| |||| ||||||||||||| ||||||||||||||||||| |||||    
T  29749380 gcatttcaaatgagaggactttttaaatgagagggtgagaggagtaaat 29749332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 47393901 - 47393945
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||    
T  47393901 tcaaatgagaggactttataaatgagagggtgagaggattaaatc 47393945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 492
Target Start/End: Original strand, 54516958 - 54517006
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagagg 492  Q
    ||||||||||| |||| |||||||| |||| ||||||||||||||||||    
T  54516958 atagagggcatttcaaatgagaggagtttttaaatgagagggtgagagg 54517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 33565363 - 33565426
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||  || || |||||||||    
T  33565363 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaa 33565426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 515
Target Start/End: Complemental strand, 36244198 - 36244131
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagatta 515  Q
    ||||||| |||| ||||| || |||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  36244198 agggcatttcaaatgagatgattttttaaatgagagggtgagaggattaaacattgaccattggatta 36244131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Original strand, 37727629 - 37727679
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    |||||||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  37727629 agggcatatcaaatgagaggactcttaaaatgaga-gatgagaggattaaat 37727679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 500
Target Start/End: Original strand, 55058528 - 55058567
Alignment:
Q  461 tgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  55058528 tgagaggaccttttaaatgagagggtgagaggattaaatc 55058567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 536
Target Start/End: Complemental strand, 24515968 - 24515886
Alignment:
Q  454 tatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaa 536  Q
    |||||| ||||||||||| | ||||||||||||||||||||| | |  |  ||| |||||||| || |||||| |||||||||    
T  24515968 tatcaaatgagaggacttcttaaatgagagggtgagaggattgattgctagccactagattaagatgaacggttaggattaaa 24515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 498
Target Start/End: Complemental strand, 40934878 - 40934828
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaa 498  Q
    ||||||| |||| | ||||||| ||| ||||||||||||||||||||||||    
T  40934878 agggcatttcaaataagaggacattttaaatgagagggtgagaggattaaa 40934828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 45082256 - 45082214
Alignment:
Q  442 taatagagggcatatcaagtgagagga-cttttaaaatgagag 483  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  45082256 taatagaggacatatcaagtgagaggatcttttaaaatgagag 45082214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 103752 - 103801
Alignment:
Q  450 ggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||| |||||    
T  103752 ggcatttcaaatgagaggacttttaaaataagagggtgggaggagtaaat 103801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 33240196 - 33240232
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagag 483  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  33240196 gagggcatatcaaatgagaggactcttaaaatgagag 33240232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 516
Target Start/End: Complemental strand, 54524728 - 54524668
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    |||| |||||||||||||||||||||||| |||||| || ||||  || ||||| ||||||    
T  54524728 tcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaa 54524668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 448 - 578
Target Start/End: Complemental strand, 50546106 - 50545976
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaagtagtcataaa 547  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50546106 agggcatatcaagtaagaggacttttaaaatgagagggtaagaggattaaatcttgtccattagattaacatcaacggtcaggattaaagtagtcataaa 50546007  T
Q  548 tattgcaagtgcacgagatcactgatgtcca 578  Q
    ||||||||||||||||||||||| |||||||    
T  50546006 tattgcaagtgcacgagatcacttatgtcca 50545976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 500
Target Start/End: Complemental strand, 2071520 - 2071468
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2071520 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 2071468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 2070783 - 2070829
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgaga 490  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2070783 atagagggcatatcaagtgagaagacttttaaaatgagagggtgaga 2070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 19790840 - 19790884
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagagg 492  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  19790840 agggcatatcaagtgagaggagttttaaaatgagagggtgagagg 19790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 15601518 - 15601465
Alignment:
Q  446 agagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||| |||||    
T  15601518 agagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaaat 15601465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 500
Target Start/End: Complemental strand, 36391395 - 36391351
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||    
T  36391395 tcaaatgagaggactttataaatgagagggtgagaggattaaatc 36391351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 39870035 - 39869997
Alignment:
Q  452 catatcaagtgagaggacttttaaaatgagagggtgaga 490  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  39870035 catatcaagtgagaggagtttttaaatgagagggtgaga 39869997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 536
Target Start/End: Complemental strand, 44770424 - 44770342
Alignment:
Q  454 tatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaa 536  Q
    |||||| ||||||||||||  ||||||||||||||||||||| | |  |  ||| |||||||| || |||||| |||||||||    
T  44770424 tatcaaatgagaggactttctaaatgagagggtgagaggattgattgctagccactagattaagatgaacggttaggattaaa 44770342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 499
Target Start/End: Complemental strand, 12644903 - 12644874
Alignment:
Q  470 ttttaaaatgagagggtgagaggattaaat 499  Q
    ||||||||||||||||||||||||||||||    
T  12644903 ttttaaaatgagagggtgagaggattaaat 12644874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 28764448 - 28764408
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagagga 493  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  28764448 tatcaagtgagaggacattttataatgagagggtgagagga 28764408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 447 - 578
Target Start/End: Original strand, 223806 - 223937
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaagtagtcataa 546  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  223806 gagggcatatcaagtaagaggacttttaaaatgagagggtgggaggattaaatcttgtccattagattaatatcaacggtcaggattaaaggagtcataa 223905  T
Q  547 atattgcaagtgcacgagatcactgatgtcca 578  Q
    |||||||||||||  ||||||||| |||||||    
T  223906 atattgcaagtgcgtgagatcacttatgtcca 223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 511 - 578
Target Start/End: Complemental strand, 224489 - 224422
Alignment:
Q  511 gattaatatcaacggtcaggattaaagtagtcataaatattgcaagtgcacgagatcactgatgtcca 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  224489 gattaatatcaacggtcaggattaaagtagtcataaatattgcaagtgcacgagatcacttatgtcca 224422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 535
Target Start/End: Complemental strand, 224512 - 224484
Alignment:
Q  507 attagattaatatcaacggtcaggattaa 535  Q
    |||||||||||||||||||||||||||||    
T  224512 attagattaatatcaacggtcaggattaa 224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 33574074 - 33574006
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  || || |||||||||    
T  33574074 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggatgaaataatgacccttagattaa 33574006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 499
Target Start/End: Original strand, 35424265 - 35424317
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  35424265 gagggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaat 35424317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 14098496 - 14098548
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||| | || ||||||||||||| ||||||||||||||||||||||||||    
T  14098496 agggcattttaaatgagaggactttttaaatgagagggtgagaggattaaatc 14098548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 514
Target Start/End: Complemental strand, 10470894 - 10470827
Alignment:
Q  448 agggcatatcaagtgagaggact-tttaaaatgagagggtgagaggattaaatcttgtccattagatt 514  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||| | ||  ||||||||||    
T  10470894 agggcatatcaagtgagaggactatttaatatgagagggtgagagggttaattattaaccattagatt 10470827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 486
Target Start/End: Complemental strand, 42655837 - 42655798
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggt 486  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  42655837 gagggcatatcaagtgagaggacttataaaatgagagggt 42655798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 18861893 - 18861958
Alignment:
Q  450 ggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||  |  ||||||||||||    
T  18861893 ggcatttcaagtgagaggacttttaaaatgaga-ggtgagagggttaaatgctaaccattagattaa 18861958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 33574133 - 33574179
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagaggattaaat 499  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33574133 tatcaagtgagaggacattttagaatgagagggtgagaggattaaat 33574179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 42654128 - 42654194
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagat 513  Q
    |||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||| |  |||||||||    
T  42654128 gagggcatattaagggagaggacttttaaaataagaggatgaaaggattaaatcataaccattagat 42654194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Original strand, 10470062 - 10470105
Alignment:
Q  450 ggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||    
T  10470062 ggcatatcaagtgagaggattttttaaatgagaggatgagagga 10470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 536
Target Start/End: Complemental strand, 11448623 - 11448541
Alignment:
Q  454 tatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaatatcaacggtcaggattaaa 536  Q
    |||||| ||||||||||| | ||||||||||||||||||||| | |  |  ||| |||||||| || |||||| |||||||||    
T  11448623 tatcaaatgagaggacttcttaaatgagagggtgagaggattgattgctagccactagattaagatgaacggttaggattaaa 11448541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 18862739 - 18862701
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggt 486  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  18862739 agggcatttcaagtgagagggcttttaaaatgagagggt 18862701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 4084813 - 4084773
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagagga 493  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  4084813 tatcaagtgagaggacattttataatgagagggtgagagga 4084773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 43512373 - 43512325
Alignment:
Q  444 atagaggg-catatcaagtgagaggact-tttaaaatgagagggtgaga 490  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  43512373 atagagggacatatcaagtgagaggactatttaatatgagagggtgaga 43512325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 19068461 - 19068512
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagaggatt 495  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  19068461 atagagggcatttcaaatgagaggactttttaaatgagagggtgagaggatt 19068512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 45432240 - 45432309
Alignment:
Q  446 agagggcatatcaagtgagaggact-tttaaaatgagagggtgagaggattaaatcttgtccattagatt 514  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||| |||| | ||  ||||||||||    
T  45432240 agagggcatatcaagtgagaagactatttaatatgagagggtgagagggttaattattaaccattagatt 45432309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 500
Target Start/End: Complemental strand, 43448559 - 43448515
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  43448559 tcaaatgagaggaccttttaaatgagagggtgagaggattaaatc 43448515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 42417441 - 42417504
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||  || || |||||||||    
T  42417441 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaa 42417504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 45433011 - 45432966
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||| ||||||||||||| |||| |||||||||| ||||||||    
T  45433011 agggcatttcaagtgagaggattttttaaatgagaggatgagagga 45432966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 42418264 - 42418224
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagagga 493  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  42418264 tatcaaatgagaggacattttaaaatgagagggtgagagga 42418224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 22406465 - 22406422
Alignment:
Q  486 tgagaggattaaatcttgtccattagattaatatcaacggtcag 529  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  22406465 tgagagggttaaatcttgtccattagattaatatcaacggtcag 22406422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 19638103 - 19638155
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||| |||| |||||||| |||| ||||||||||||||||||||||||||    
T  19638103 agggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatc 19638155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 499
Target Start/End: Complemental strand, 49574784 - 49574741
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaat 499  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||    
T  49574784 tcaaatgagaggactttttaaatgagagggtgagaggagtaaat 49574741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 516
Target Start/End: Complemental strand, 50186106 - 50186043
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||  || || |||||||||    
T  50186106 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaa 50186043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 23531092 - 23531150
Alignment:
Q  451 gcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccatt 509  Q
    |||||||||||||||| |||||||   ||||||||||||||||| ||||| || |||||    
T  23531092 gcatatcaagtgagagaacttttattgtgagagggtgagaggatcaaatcctgaccatt 23531150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 494
Target Start/End: Original strand, 43428476 - 43428522
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggat 494  Q
    ||||||| | || ||||||||||||| ||||||||||||||||||||    
T  43428476 agggcattttaaatgagaggactttttaaatgagagggtgagaggat 43428522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 17736577 - 17736649
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||| ||| |||| |||||||| ||||||||||||||| |||||| || ||||  || ||||| ||||||    
T  17736577 atagaggacatttcaaatgagaggagttttaaaatgagaggatgagagcatgaaatagtggccattggattaa 17736649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 21436558 - 21436626
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||| |||| |||||||| |||| ||||||||||||||||| || ||||  || ||||| ||||||    
T  21436558 agggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaa 21436626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 29881578 - 29881645
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||| |||||||||||| |||||||||| ||| |||| |||||||||||  |  ||||||||||||    
T  29881578 agggcatttcaagtgagagggcttttaaaataaga-ggtgggaggattaaatgctaaccattagattaa 29881645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 50185283 - 50185323
Alignment:
Q  454 tatcaagtgagaggac-ttttaaaatgagagggtgagagga 493  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  50185283 tatcaaatgagaggacattttaaaatgagagggtgagagga 50185323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 56295234 - 56295270
Alignment:
Q  448 agggcatatcaagtgagagga-cttttaaaatgagag 483  Q
    ||||||||||||||||||||| |||||||||||||||    
T  56295234 agggcatatcaagtgagaggaccttttaaaatgagag 56295270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 20508611 - 20508663
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||    
T  20508611 agggcatttcaaatgagatgactttttaaatgagagggtgagaggattaaatc 20508663  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 15997587 - 15997537
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagaggat 494  Q
    ||||||||||| |||| |||||||| |||| ||||||||||||||||||||    
T  15997587 atagagggcatttcaaatgagaggagtttttaaatgagagggtgagaggat 15997537  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 29344696 - 29344625
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||||||| |||||||| ||| |||||||||||||| ||||||||| ||||||  |  ||||||||||||    
T  29344696 atagagggcatttcaagtgaaagggcttttaaaatgaga-ggtgagagggttaaatgctaaccattagattaa 29344625  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 4279094 - 4279132
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggat 494  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  4279094 tcaaatgagaggactttttaaatgagagggtgagaggat 4279132  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Complemental strand, 4284389 - 4284351
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggat 494  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  4284389 tcaaatgagaggactttttaaatgagagggtgagaggat 4284351  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 18970704 - 18970658
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    |||||||| |||| | |||||||||||||||||||||| ||||||||    
T  18970704 gagggcatttcaaataagaggacttttaaaatgagaggatgagagga 18970658  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 20756458 - 20756389
Alignment:
Q  447 gagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    |||||||| |||| |||||||| |||| ||||||||||||||||| || ||||  || ||||| ||||||    
T  20756458 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaa 20756389  T

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Target: scaffold0159 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 515
Target Start/End: Original strand, 28154 - 28221
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagatta 515  Q
    ||||||| |||| | ||||||||||| |||||||||||||||||||| |||   || |||||||||||    
T  28154 agggcatttcaaataagaggactttttaaatgagagggtgagaggatgaaacagtggccattagatta 28221  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 34237981 - 34238044
Alignment:
Q  452 catatcaagtgagaggact-tttaaaatgagagggtgagaggattaaatcttgtccattagatt 514  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| | ||  ||||||||||    
T  34237981 catatcaagtgagaggactatttaatatgagagggtgagagggttaattattaaccattagatt 34238044  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 30784884 - 30784922
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggat 494  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  30784884 tcaaatgagaggactttttaaatgagagggtgagaggat 30784922  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 25616852 - 25616893
Alignment:
Q  450 ggcatatcaagtgagaggacttttaaaatgagagggtgagag 491  Q
    ||||| |||| ||||||||||||| |||||||||||||||||    
T  25616852 ggcatttcaaatgagaggactttttaaatgagagggtgagag 25616893  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 30266321 - 30266366
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||| |||| |||||| |||||| |||||||||||||||||||    
T  30266321 agggcatttcaaatgagagcactttttaaatgagagggtgagagga 30266366  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 38799301 - 38799234
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatcttgtccattagattaa 516  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||| ||||||  |  ||||||||||||    
T  38799301 agggcatttcaagtgagagggcttttaagatgaga-ggtgagagggttaaatgctaaccattagattaa 38799234  T

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Target: scaffold1370 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 202 - 247
Alignment:
Q  448 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||| |||| ||||||||||||| |||||||||| ||||||||    
T  202 agggcatttcaaatgagaggactttttaaatgagaggatgagagga 247  T

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Target: scaffold1370; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 965 - 910
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||||  ||||||||||||||| ||||||||||||| | ||||||| |||||||    
T  965 atagagggtgtatcaagtgagaggaattttaaaatgaga-gatgagagggttaaatc 910  T

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Target: scaffold0285 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 17591 - 17542
Alignment:
Q  444 atagagggcatatcaagtgagaggacttttaaaatgagagggtgagagga 493  Q
    ||||||||||| |||| |||||||| |||| |||||||||| ||||||||    
T  17591 atagagggcatttcaaatgagaggattttttaaatgagaggatgagagga 17542  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 150593 - 150636
Alignment:
Q  456 tcaagtgagaggacttttaaaatgagagggtgagaggattaaatc 500  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  150593 tcaagtgagaggacttttaaaatgaga-gatgagaggatgaaatc 150636  T

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