View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_21 (Length: 275)
Name: NF10437_1D_low_21
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 39178072 - 39177813
Alignment:
| Q |
15 |
atggacatcagcacaaaggtgaggataaagcttgttgcaaactgcaatctgcaatgatgtaaaactgtgtgtataagaaaaggcgcagatctgacatact |
114 |
Q |
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| T |
39178072 |
atggacataagcacaaaggtgaggataaagcttgttgcaaactgcaatctgcaatgatgtaaaactgtgtgtataagaaaaggcgcagatctgacatact |
39177973 |
T |
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| Q |
115 |
tctttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagagggcatgccactggatatgagaaaggagaaaagagatctttacg |
214 |
Q |
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| T |
39177972 |
tctttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagaggg-atgccactggatatgagaaaggagaaaagagatctttacg |
39177874 |
T |
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| Q |
215 |
tcgcatttgaggatctatttgccacctcaccgacggaagagcagaaaacaactataaaaaa |
275 |
Q |
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| T |
39177873 |
tcgcatttgaggttctatttgccacctcactgacggaagagcagaaaacaactataaaaaa |
39177813 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 39168256 - 39168178
Alignment:
| Q |
125 |
cttagagaaacacaaatccaaagcaa-gtgaggaagttcaaaggagagggcatgccactggatatgagaaaggagaaaa |
202 |
Q |
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| T |
39168256 |
cttagggaatcacaaatccaaagcaaagtgaagaagttcagaggagagggcatgtcactgcttatgagaaaagagaaaa |
39168178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 44691465 - 44691574
Alignment:
| Q |
117 |
tttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagagggcatgccactggatatgagaaaggagaaaagagatctttacgtc |
216 |
Q |
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| T |
44691465 |
tttgatccctcagggaatcacaaatccgaagcaagtgaggaagttcaaaggggagggtatgccattgcatacgagcacgaagaaaggagatctttacgtc |
44691564 |
T |
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| Q |
217 |
gcatttgagg |
226 |
Q |
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| T |
44691565 |
acttttgagg |
44691574 |
T |
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