View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_24 (Length: 266)
Name: NF10437_1D_low_24
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25540224 - 25539981
Alignment:
| Q |
1 |
ggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540224 |
ggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagt |
25540125 |
T |
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| Q |
101 |
tgtttgtcataagctctcctaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540124 |
tgtttgtcataagctctcttaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgc |
25540025 |
T |
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| Q |
201 |
tgttcctctcgtcgtacccctctttgctcttcaactcatgtatt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540024 |
tgttcctctcgtcgtacccctctttgctcttcaactcatgtatt |
25539981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 25517391 - 25517494
Alignment:
| Q |
35 |
tggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaa |
134 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517391 |
tggtatatgcactttatagaggtgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaa |
25517490 |
T |
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| Q |
135 |
tttg |
138 |
Q |
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|||| |
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| T |
25517491 |
tttg |
25517494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 25517537 - 25517596
Alignment:
| Q |
185 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtatt |
244 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctcaactcatgtatt |
25517596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25524650 - 25524598
Alignment:
| Q |
1 |
ggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
53 |
Q |
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||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25524650 |
ggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
86 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
145 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
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| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
77 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
135 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
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