View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_25 (Length: 261)

Name: NF10437_1D_low_25
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_25
NF10437_1D_low_25
[»] chr2 (3 HSPs)
chr2 (133-261)||(30339681-30339810)
chr2 (136-191)||(44977387-44977442)
chr2 (136-196)||(34134653-34134713)
[»] chr4 (4 HSPs)
chr4 (145-194)||(52431015-52431064)
chr4 (136-195)||(42815533-42815592)
chr4 (139-191)||(42491205-42491257)
chr4 (139-191)||(50831643-50831695)
[»] chr5 (1 HSPs)
chr5 (136-195)||(6940033-6940092)
[»] chr3 (3 HSPs)
chr3 (136-191)||(11075264-11075319)
chr3 (138-192)||(45754770-45754824)
chr3 (136-189)||(11056823-11056876)
[»] chr8 (1 HSPs)
chr8 (136-193)||(10644687-10644744)
[»] chr7 (1 HSPs)
chr7 (141-194)||(39497186-39497239)
[»] chr6 (2 HSPs)
chr6 (168-197)||(25995601-25995630)
chr6 (168-197)||(26095064-26095093)
[»] chr1 (1 HSPs)
chr1 (136-192)||(46281565-46281621)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 30339810 - 30339681
Alignment:
Q  133 gttaatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactcatttttatttgtatggagggagaaattgatagatgtagata 232  Q
    ||||||||||| |||||||||| ||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30339810 gttaatttatgattgtctcataagttctcatttaaatggttgttcaaataacacaactcatttttatttgtatggagggagaaattgatagctgtagata 30339711  T
Q  233 ataaaattac-ttaacagttatgcatttaa 261  Q
    |||||||||| |||||||||||||||||||    
T  30339710 ataaaattactttaacagttatgcatttaa 30339681  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 44977442 - 44977387
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactc 191  Q
    ||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||    
T  44977442 aatttatggttgtctcataagttttcgttcaaatggttgttcaaataacacaactc 44977387  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 34134713 - 34134653
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactcatttt 196  Q
    ||||||||||||||  ||| ||||||  ||| |||||||||||||||||||| ||| ||||    
T  34134713 aatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctcctttt 34134653  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 52431015 - 52431064
Alignment:
Q  145 ttgtctcataggttgtccttcatatggttgttcaaataacacaactcatt 194  Q
    ||||||||||||||||| | || |||||||||||||||||||||||||||    
T  52431015 ttgtctcataggttgtcatacaaatggttgttcaaataacacaactcatt 52431064  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 42815533 - 42815592
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactcattt 195  Q
    ||||||||||||||  ||| ||||||  ||| |||||||||||||||||||| |||||||    
T  42815533 aatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctcattt 42815592  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 42491205 - 42491257
Alignment:
Q  139 ttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactc 191  Q
    ||||||||||| || | ||||||  ||| ||||||||||||||||||||||||    
T  42491205 ttatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 42491257  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 50831695 - 50831643
Alignment:
Q  139 ttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactc 191  Q
    ||||||||||| || | ||||||  ||| ||||||||||||||||||||||||    
T  50831695 ttatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 50831643  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 6940092 - 6940033
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactcattt 195  Q
    ||||||||||||||  ||| ||||||  ||| |||||||||||||||||||| |||||||    
T  6940092 aatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctcattt 6940033  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 11075319 - 11075264
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactc 191  Q
    ||||||||||||||||| | |||||| | || |||||||||||||||||| |||||    
T  11075319 aatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataacataactc 11075264  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 45754770 - 45754824
Alignment:
Q  138 tttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactca 192  Q
    ||||||||||||| ||| ||| ||  ||| |||||||||||||||||||||||||    
T  45754770 tttatggttgtctaataagttatcaatcaaatggttgttcaaataacacaactca 45754824  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 11056876 - 11056823
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaac 189  Q
    ||||||||||||||||| | |||||  | || ||||||||||||||||||||||    
T  11056876 aatttatggttgtctcaaaagttgttatacaaatggttgttcaaataacacaac 11056823  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 10644744 - 10644687
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactcat 193  Q
    ||||||||||||||  ||| ||||||  ||| |||||||||||||||||||| |||||    
T  10644744 aatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctcat 10644687  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 39497239 - 39497186
Alignment:
Q  141 atggttgtctcataggttgtccttcatatggttgttcaaataacacaactcatt 194  Q
    |||||||||| ||| ||| || || | |||||||||||||||||||||||||||    
T  39497239 atggttgtcttataagttatcattgaaatggttgttcaaataacacaactcatt 39497186  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 25995601 - 25995630
Alignment:
Q  168 atggttgttcaaataacacaactcattttt 197  Q
    ||||||||||||||||||||||||||||||    
T  25995601 atggttgttcaaataacacaactcattttt 25995630  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 26095064 - 26095093
Alignment:
Q  168 atggttgttcaaataacacaactcattttt 197  Q
    ||||||||||||||||||||||||||||||    
T  26095064 atggttgttcaaataacacaactcattttt 26095093  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 46281565 - 46281621
Alignment:
Q  136 aatttatggttgtctcataggttgtccttcatatggttgttcaaataacacaactca 192  Q
    ||||||||||||||  ||| ||||||  ||| |||||||||||||||||||| ||||    
T  46281565 aatttatggttgtcaaatatgttgtctatcaaatggttgttcaaataacacacctca 46281621  T

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