View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_27 (Length: 248)
Name: NF10437_1D_low_27
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 25541037 - 25541265
Alignment:
| Q |
1 |
ataggattcacttacaaaatcatagaccctacaaaatattgctctacaaagaaaaatgtcctactgttaaatgttaggatgtagagctggtcacatttat |
100 |
Q |
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| T |
25541037 |
ataggattcacttacaaaatcatagaccctacaaaatattgctctacaaagaaaaatgtcctactgttaaatgttaggatgtagagctggtcacatttat |
25541136 |
T |
|
| Q |
101 |
aaataaacaaaaaacttcctatcaactatgacctactccagctgattgggacggcaaaacttctcaaccgaatttttccaaaactctggtgctggcagac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25541137 |
aaataaacaaaaaacttcctatcaactatgacctactccagctgattgggacggcaaaacttctcaaccgaatttttccaaaagtctggtgctggcagac |
25541236 |
T |
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| Q |
201 |
tgtcttccgtggatggattacatccgtga |
229 |
Q |
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| T |
25541237 |
tgtcttccgtggatggattacatccgtga |
25541265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25515916 - 25515836
Alignment:
| Q |
1 |
ataggattcacttacaaaatcatagaccctacaaaatattgctctacaaagaaaaatgtcctactgttaaatgttaggatg |
81 |
Q |
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|||||||||| ||| ||||| | ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
25515916 |
ataggattcatttaaaaaattacagaccctcaaaaatattgccttacaaagaaaaatgtcatactgttaaatgttaggatg |
25515836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 25526588 - 25526619
Alignment:
| Q |
53 |
aaaatgtcctactgttaaatgttaggatgtag |
84 |
Q |
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| T |
25526588 |
aaaatgtcctactgttaaatgttaggatgtag |
25526619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 25534592 - 25534623
Alignment:
| Q |
53 |
aaaatgtcctactgttaaatgttaggatgtag |
84 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25534592 |
aaaatgtcctactgttaaatgttaggatgtag |
25534623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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