View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_30 (Length: 240)
Name: NF10437_1D_low_30
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 50337299 - 50337368
Alignment:
| Q |
150 |
tctcgccttaatgatttata--tacaaaaccaaacgttgtatctgagtccgtataaaatacacaataatt |
217 |
Q |
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| T |
50337299 |
tctcgccttaataatttatatatacaaaaccaaacattgtatctgagtccgtataaaatacacaataatt |
50337368 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 50337244 - 50337291
Alignment:
| Q |
11 |
gtgttgtggagaattttaattgctggataacgaagctctattgtatac |
58 |
Q |
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| T |
50337244 |
gtgttgtggagaattttaattgctggataacgaagctctattgtatac |
50337291 |
T |
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