View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_34 (Length: 230)
Name: NF10437_1D_low_34
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_34 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 31560096 - 31559914
Alignment:
| Q |
48 |
ttatttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggaaatcgttg |
147 |
Q |
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| T |
31560096 |
ttatttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggtaatcgttg |
31559997 |
T |
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| Q |
148 |
aagtttaagacgatttttcaaataccgatctacgattcaccatataacttaccttggacgaccttcgtgattgaaaactaata |
230 |
Q |
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| T |
31559996 |
aagtttaagacgatttttcaaataccgatctatgattcaccatagaacttaccttggacgaccttcgtgattgaaagctaata |
31559914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 31876798 - 31876932
Alignment:
| Q |
95 |
caattaggaggacaataaacttctacttcagggactgacatcggaaatcgttgaagtttaagacgatttttcaaataccgatctacgattcaccatataa |
194 |
Q |
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| T |
31876798 |
caattagaaggacagttagcttctacttgagggaccgacgtcggttatcgttgaagtttaagaagatttttcaagtactgatctacggttcatcattgaa |
31876897 |
T |
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| Q |
195 |
cttaccttggacgaccttcgtgattgaaaactaat |
229 |
Q |
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| T |
31876898 |
ctttccttggatgaccttcatgattgaaagctaat |
31876932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 31557251 - 31557118
Alignment:
| Q |
51 |
tttttgccaaattgacgccaatcatgtcgatgtctttggcaacacaattaggaggacaataaacttctacttcagggactgacatcggaaatcgttgaag |
150 |
Q |
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| T |
31557251 |
tttttgccaaattgaaaccaatcatgtcaatgtctttggtataacaattaggacgacagtaaact--tacttcacggaccaacgtcggtaatcattgaag |
31557154 |
T |
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| Q |
151 |
tttaagacgatttttcaaataccgatctacgattca |
186 |
Q |
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| T |
31557153 |
tttaagacgaattttcaagtaccgatgtacaattca |
31557118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 31556945 - 31556897
Alignment:
| Q |
182 |
attcaccatataacttaccttggacgaccttcgtgattgaaaactaata |
230 |
Q |
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| T |
31556945 |
attcaccatagaacttacattggacgaccttcgtgattgaaaactaata |
31556897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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