View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_35 (Length: 228)

Name: NF10437_1D_low_35
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_35
NF10437_1D_low_35
[»] chr5 (7 HSPs)
chr5 (2-60)||(5463635-5463693)
chr5 (154-228)||(42912842-42912917)
chr5 (154-194)||(30966158-30966198)
chr5 (159-228)||(30192526-30192596)
chr5 (164-196)||(13590611-13590643)
chr5 (200-228)||(13838435-13838463)
chr5 (154-217)||(30966608-30966672)
[»] chr1 (4 HSPs)
chr1 (154-228)||(18609859-18609934)
chr1 (200-228)||(41459222-41459250)
chr1 (200-228)||(47585631-47585659)
chr1 (200-228)||(50037281-50037309)
[»] chr2 (13 HSPs)
chr2 (154-227)||(28419442-28419516)
chr2 (154-228)||(29407851-29407926)
chr2 (154-228)||(30271108-30271183)
chr2 (154-228)||(30273114-30273189)
chr2 (154-228)||(33222650-33222725)
chr2 (154-216)||(37294375-37294438)
chr2 (154-195)||(1728832-1728873)
chr2 (154-225)||(29407009-29407082)
chr2 (200-228)||(2983434-2983462)
chr2 (154-225)||(28139520-28139592)
chr2 (200-228)||(40221141-40221169)
chr2 (200-228)||(41565352-41565380)
chr2 (200-228)||(43618607-43618635)
[»] scaffold1379 (1 HSPs)
scaffold1379 (154-228)||(398-473)
[»] chr8 (5 HSPs)
chr8 (154-228)||(13783072-13783147)
chr8 (154-228)||(34892773-34892848)
chr8 (154-228)||(3641680-3641755)
chr8 (159-225)||(13782272-13782339)
chr8 (154-228)||(40740940-40741015)
[»] chr3 (11 HSPs)
chr3 (154-228)||(32592251-32592326)
chr3 (154-192)||(34722296-34722334)
chr3 (154-227)||(51755814-51755888)
chr3 (160-228)||(6143705-6143774)
chr3 (160-216)||(31890212-31890269)
chr3 (154-228)||(7941144-7941219)
chr3 (154-228)||(20485495-20485570)
chr3 (154-227)||(45075381-45075455)
chr3 (200-228)||(34712267-34712295)
chr3 (200-228)||(45507408-45507436)
chr3 (200-228)||(50604431-50604459)
[»] chr6 (2 HSPs)
chr6 (154-226)||(15546353-15546426)
chr6 (154-227)||(35096673-35096747)
[»] chr7 (4 HSPs)
chr7 (154-228)||(38555377-38555452)
chr7 (154-196)||(38555131-38555173)
chr7 (154-225)||(14102312-14102384)
chr7 (154-225)||(14412329-14412401)
[»] chr4 (2 HSPs)
chr4 (154-228)||(43176592-43176667)
chr4 (200-228)||(37022072-37022100)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 5463635 - 5463693
Alignment:
Q  2 caattgaatagcccaaggttttgattcctgcataaaataaattaaattaaattagcaaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5463635 caattgaatagcccaaggttttgattcctgcataaaataaaataaattaaattagcaaa 5463693  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 42912842 - 42912917
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||| |||||||||| || |||||||||||  | ||||||| |||||||||||||||||||||    
T  42912842 gtgtatttccttatttagtttcaggtttgaaattcttcggcagttaactgccgaagttttcctcggtagttaactg 42912917  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 30966198 - 30966158
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggc 194  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  30966198 gtgtatttccttatttaatttcaggttttaagttcctcggc 30966158  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 30192596 - 30192526
Alignment:
Q  159 tttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||  |||||||||    
T  30192596 tttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcgacagttaactg 30192526  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 13590611 - 13590643
Alignment:
Q  164 ttatttaatttcaggttttaagttcttcggcag 196  Q
    |||||||||||||||||||||||||| ||||||    
T  13590611 ttatttaatttcaggttttaagttctgcggcag 13590643  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 13838435 - 13838463
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  13838435 ctgccgaggttttcctcggtagttaactg 13838463  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 30966608 - 30966672
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcg 217  Q
    |||| ||| |||||||||||| ||||||||||||| |||||||  | ||||||| ||||||||||    
T  30966608 gtgtattttcttatttaatttaaggttttaagttcctcggcagttaactgccgaagttttcctcg 30966672  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 18609859 - 18609934
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| |||||||||||||||||||||    
T  18609859 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggtagttaactg 18609934  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 41459222 - 41459250
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  41459222 ctgccgaggttttcctcggtagttaactg 41459250  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 47585659 - 47585631
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  47585659 ctgccgaggttttcctcggtagttaactg 47585631  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 50037281 - 50037309
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  50037281 ctgccgaggttttcctcggtagttaactg 50037309  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 28419516 - 28419442
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaact 227  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||||||||||||    
T  28419516 gtgtatttccttatttaatttcaggtttgaaattcatcggcagttaactgccgaagttttcctcggtagttaact 28419442  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 29407851 - 29407926
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| |||||||||| ||||||||||    
T  29407851 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcgttagttaactg 29407926  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 30271183 - 30271108
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||||||||||||||||||||||||| |||  | || |||| ||||||||| | |||||||||    
T  30271183 gtgtatttccttatttaatttcaggttttaagttcttcgacagttaactaccgaagttttcctcagcagttaactg 30271108  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 30273114 - 30273189
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcagc-agctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||||||| ||||||||||||| ||||||   | || |||||||||||||||| |||||||||    
T  30273114 gtgtatttccttatttaattttaggttttaagttcctcggcaattaactaccgaggttttcctcggcagttaactg 30273189  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 33222725 - 33222650
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||| |||||||||    
T  33222725 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactg 33222650  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 37294438 - 37294375
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctc 216  Q
    |||| ||||||||||||||||||||||| || |||||||||||  | ||||||| |||||||||    
T  37294438 gtgtatttccttatttaatttcaggtttgaaattcttcggcagttaactgccgaagttttcctc 37294375  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 1728873 - 1728832
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggca 195  Q
    |||| ||||||||||||||||||||||| || ||||||||||    
T  1728873 gtgtatttccttatttaatttcaggtttgaaattcttcggca 1728832  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 29407082 - 29407009
Alignment:
Q  154 gtgtgtttccttatttaatttcaggtttt-aagttcttcggcag-cagctgccgaggttttcctcggtagttaa 225  Q
    |||| ||| |||||||||||||||||||| || |||||||||||  | ||||||| ||||||||||| ||||||    
T  29407082 gtgtatttacttatttaatttcaggttttgaaattcttcggcagttaactgccgaagttttcctcggcagttaa 29407009  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 2983462 - 2983434
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  2983462 ctgccgaggttttcctcggtagttaactg 2983434  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 28139520 - 28139592
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaa 225  Q
    |||| ||||||||||||||||||||||| || ||| || ||||  | ||||||| ||||||||||| ||||||    
T  28139520 gtgtatttccttatttaatttcaggtttgaaattcctcagcagttaactgccgaagttttcctcggcagttaa 28139592  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 40221141 - 40221169
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  40221141 ctgccgaggttttcctcggtagttaactg 40221169  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 41565380 - 41565352
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  41565380 ctgccgaggttttcctcggtagttaactg 41565352  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 43618635 - 43618607
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  43618635 ctgccgaggttttcctcggtagttaactg 43618607  T

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Target: scaffold1379 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 398 - 473
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||||||||||||||||||||| |||| ||  | || |||||||||||||||  |||||||||    
T  398 gtgtatttccttatttaatttcaggttttaagttcctcggtagttaactcccgaggttttcctcgacagttaactg 473  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 13783072 - 13783147
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||||||| |||  | ||||||| ||||||||||| |||||||||    
T  13783072 gtgtatttccttatttaatttcaggtttgaaattcttcgacagttaactgccgaagttttcctcggcagttaactg 13783147  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 34892773 - 34892848
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||| |||||||||    
T  34892773 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactg 34892848  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 3641755 - 3641680
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||||||||| ||||||||||| |||||||  |  | |||||||||||||| | |||||||||    
T  3641755 gtgtatttccttatttaatttcaagttttaagttcatcggcagttaattcccgaggttttcctcagcagttaactg 3641680  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 13782339 - 13782272
Alignment:
Q  159 tttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaa 225  Q
    ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||| ||||||    
T  13782339 tttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaa 13782272  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 40741015 - 40740940
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| ||  || |||||||  | ||||||| ||||||||||| |||||||||    
T  40741015 gtgtatttccttatttaatttcaggtttgaaaatcctcggcagttaactgccgaagttttcctcggcagttaactg 40740940  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 32592326 - 32592251
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcagc-agctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||| | ||| ||| ||||||||||| |||||||||    
T  32592326 gtgtatttccttatttaatttcaggtttgaaattcctcggcagctaactgtcgaagttttcctcggcagttaactg 32592251  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 34722334 - 34722296
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcg 192  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  34722334 gtgtatttccttatttaatttcaggttttaagttcttcg 34722296  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 51755814 - 51755888
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaact 227  Q
    |||| ||||||||||||||||||||||| || |||||||||||  | ||||||| ||||||||| | ||||||||    
T  51755814 gtgtatttccttatttaatttcaggtttgaaattcttcggcagttaactgccgaagttttcctctgcagttaact 51755888  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 6143774 - 6143705
Alignment:
Q  160 ttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||| |||||||||    
T  6143774 ttccttatttaatttcaggtttaaaattcctcggcagttaactgccgaagttttcctcggcagttaactg 6143705  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 31890212 - 31890269
Alignment:
Q  160 ttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctc 216  Q
    ||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||||    
T  31890212 ttccttatttaatttcaggttttaagttcatcggcagttaactgccgaagttttcctc 31890269  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 7941219 - 7941144
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||| | |||||||||    
T  7941219 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcagcagttaactg 7941144  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 20485495 - 20485570
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  |  |||||| ||||||||||| |||||||||    
T  20485495 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaattgccgaagttttcctcggcagttaactg 20485570  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 45075455 - 45075381
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaact 227  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||| | ||||||||||| ||||||||    
T  45075455 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccaaagttttcctcggcagttaact 45075381  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 34712295 - 34712267
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  34712295 ctgccgaggttttcctcggtagttaactg 34712267  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 45507408 - 45507436
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  45507408 ctgccgaggttttcctcggtagttaactg 45507436  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 50604431 - 50604459
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  50604431 ctgccgaggttttcctcggtagttaactg 50604459  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 15546353 - 15546426
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaac 226  Q
    |||| ||||||||||||||||||||||| || ||| |||||||  | ||||||| ||||||||||| |||||||    
T  15546353 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaac 15546426  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 35096747 - 35096673
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaact 227  Q
    |||| ||| |||||||||||| |||||| || |||||||||||  | ||||||| ||||||||||| ||||||||    
T  35096747 gtgtattttcttatttaattttaggtttgaaattcttcggcagttaactgccgaagttttcctcggcagttaact 35096673  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 38555377 - 38555452
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| |||||||||||||||| |||||| || || ||||||||  | ||||||| ||||||||||| |||||||||    
T  38555377 gtgtatttccttatttaattttaggtttgaaatttttcggcagttaactgccgaagttttcctcggcagttaactg 38555452  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 38555173 - 38555131
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag 196  Q
    |||| ||||||||||||||||||||||| || |||||||||||    
T  38555173 gtgtatttccttatttaatttcaggtttgaaattcttcggcag 38555131  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 14102312 - 14102384
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaa 225  Q
    |||| |||||||||||||||||| |||| || ||| |||||||  | ||||||| ||||||||||| ||||||    
T  14102312 gtgtatttccttatttaatttcatgtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaa 14102384  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 14412329 - 14412401
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaa 225  Q
    |||| |||||||||||||||||| |||| || ||| |||||||  | ||||||| ||||||||||| ||||||    
T  14412329 gtgtatttccttatttaatttcaagtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaa 14412401  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 43176592 - 43176667
Alignment:
Q  154 gtgtgtttccttatttaatttcaggttttaagttcttcggcag-cagctgccgaggttttcctcggtagttaactg 228  Q
    |||| ||||||||||||||||||||||| || ||| |||| ||  | ||||||| ||||||||||| |||||||||    
T  43176592 gtgtatttccttatttaatttcaggtttgaaattcctcggtagttaactgccgaagttttcctcggcagttaactg 43176667  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 37022072 - 37022100
Alignment:
Q  200 ctgccgaggttttcctcggtagttaactg 228  Q
    |||||||||||||||||||||||||||||    
T  37022072 ctgccgaggttttcctcggtagttaactg 37022100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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