View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_37 (Length: 224)

Name: NF10437_1D_low_37
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_37
NF10437_1D_low_37
[»] chr5 (2 HSPs)
chr5 (1-208)||(32953942-32954148)
chr5 (1-208)||(29881094-29881295)
[»] chr8 (2 HSPs)
chr8 (1-208)||(3926605-3926806)
chr8 (1-208)||(3918346-3918547)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-208)||(1716-1915)
[»] chr3 (4 HSPs)
chr3 (1-206)||(30035197-30035394)
chr3 (1-64)||(20286054-20286117)
chr3 (1-64)||(20334732-20334795)
chr3 (163-208)||(20334868-20334913)
[»] chr1 (1 HSPs)
chr1 (1-208)||(36919125-36919326)
[»] chr4 (3 HSPs)
chr4 (1-208)||(6871925-6872135)
chr4 (109-208)||(51883465-51883564)
chr4 (1-59)||(51883369-51883427)
[»] scaffold0652 (2 HSPs)
scaffold0652 (1-71)||(7267-7337)
scaffold0652 (163-208)||(7391-7436)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 32953942 - 32954148
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||| | | |||||||||||||||||            || ||||||||||||||    
T  32953942 tgtggatttcaaacacagatgaaaatcccaagagaaagttctgaagatgccaattttctggagtaagtgaatttttattttt-ctggagatgtaaatgtt 32954040  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  32954041 gtgtttcaaattttccttacatatgcagttttgtaatagttgctaaatttgtaagccgaaacttattgcaggctgagtatagttgtgagttgttcatttg 32954140  T
Q  201 ggatgatg 208  Q
    ||||||||    
T  32954141 ggatgatg 32954148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 29881295 - 29881094
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||                 ||||||||| ||    
T  29881295 tgtggatttcaaacacaaatgaaaaccccaagagaaagttttggagatgccgattttctggagtaagtgaattttttatttt------gatgtaaatttt 29881202  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
     |||||||||||||||  || ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29881201 ttgtttcaaattttccaaacgtatgtagttttgaaatagttgctaaatttgtaagccgaaacttattgcaggctgagtatagttgtgagctgttcatttg 29881102  T
Q  201 ggatgatg 208  Q
    ||||||||    
T  29881101 ggatgatg 29881094  T

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Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3926605 - 3926806
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||                 ||||||||| ||    
T  3926605 tgtggatttcaaacacagatgaaaatcccaagagaaagttttggagatgccgattttctggagtaagtgaattttttatttt------gatgtaaatttt 3926698  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
     |||||||||||||||  || ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3926699 ttgtttcaaattttccaaacgtatgtagttttgaaatagttgctaaatttgtaagccgaaacttattgcaggctgagtatagttgtgagctgttcatttg 3926798  T
Q  201 ggatgatg 208  Q
    ||||||||    
T  3926799 ggatgatg 3926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3918346 - 3918547
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||                 ||||||||| |     
T  3918346 tgtggatttcaaacacagatgaaaatcccaagagaaagttttggagatgccgattttctggagtaagtgaattttttatttt------gatgtaaatttg 3918439  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
     |||||||||||||||  || ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3918440 ttgtttcaaattttccaaacgtatgtagttttgaaatagttgctaaatttgtaagccgaaacttattgcaggctgagtatagttgtgagctgttcatttg 3918539  T
Q  201 ggatgatg 208  Q
    ||||||||    
T  3918540 ggatgatg 3918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 1716 - 1915
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||                  |||||||| ||    
T  1716 tgtggatttcaaacacagatgaaaatcccaagagaaagttttggagatgtcgattttctggagtaagtgaattttttattttt------atgtaaatttt 1809  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
    ||  |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  1810 gt--ttcaaattttccttacgtatgtagttttgaaatagttgctaaatttgtaagccgaaaattattgcaggctgagtatagttgtgagctgttcatttg 1907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 30035197 - 30035394
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||                  |||||||| ||    
T  30035197 tgtggatttcaa-cacagatgaaaatcccaagagaaagttttggagatgccgattttctggagtaagtgaattttttattttt------atgtaaatttt 30035289  T
Q  101 gtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttg 200  Q
     ||||||||||||| ||||| ||| |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30035290 ttgtttcaaatttttcttacgtatgtagttttgaaatagttgctaa-tttgtaagccgaaaattattgcaggctgagtatagttgtgagctgttcatttg 30035388  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20286054 - 20286117
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagt 64  Q
    ||||||||||||||| |  ||||||||| |||||||||| ||||||||||||| ||| ||||||    
T  20286054 tgtggatttcaaacacaactgaaaatccaaagagaaagtgttggagatgtcgattttatggagt 20286117  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20334732 - 20334795
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagt 64  Q
    |||| |||||||||| |  ||||||||| ||||||||||||| |||||||||| ||| ||||||    
T  20334732 tgtgtatttcaaacacaactgaaaatccgaagagaaagttttagagatgtcgattttatggagt 20334795  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 20334868 - 20334913
Alignment:
Q  163 ttattgcaggctgagtatagttgtgagctgttcatttgggatgatg 208  Q
    ||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  20334868 ttattacaggttgagtatggttgtgatctgttcatttgggatgatg 20334913  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 36919326 - 36919125
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagt---aagtgaannnnnnnnnnnnctagagatgtaaat 97  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||| || |||   |||||||            || |||||||||||    
T  36919326 tgtggatttcaaacacagatgaaaatcacaagagaaagttttggagatgccgattttttgcagtggtaagtgaattttttatttttctggagatgtaaat 36919227  T
Q  98 gttgtgtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcat 197  Q
     ||||||||||||||||||||||||||  ||||||||||||||||| ||         | | |||||||  ||||||||||||||||||||| |||||||    
T  36919226 attgtgtttcaaattttccttacatatgcagttttgtaatagttgcgaa---------ctgaaacttataacaggctgagtatagttgtgagttgttcat 36919136  T
Q  198 ttgggatgatg 208  Q
    |||||||||||    
T  36919135 ttgggatgatg 36919125  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 6872135 - 6871925
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaannnnnnnnnnnnctagagatgtaaatgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||              |  |||||| ||| ||    
T  6872135 tgtggatttcaaacacagatgaaaatcccaagagaaagttttggagatgtcgattttctggagtaagtgattttatttatttattttagatgttaatttt 6872036  T
Q  101 gt----gtttcaaattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttca 196  Q
    ||    |||| ||||||| ||||||| |  || ||||||||||||| ||||  | |||   ||||||||||| |||||||||||||||| ||||||||||    
T  6872035 gtgtgagtttaaaattttgcttacatctgcag-tttgtaatagttggtaaacctataacttggaacttattgtaggctgagtatagttgcgagctgttca 6871937  T
Q  197 tttgggatgatg 208  Q
    ||||||||||||    
T  6871936 tttgggatgatg 6871925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 51883465 - 51883564
Alignment:
Q  109 aattttccttacatatatagttttgtaatagttgctaaatttgtaagccggaacttattgcaggctgagtatagttgtgagctgttcatttgggatgatg 208  Q
    |||||||||||||| |  ||||||||||  |||  | || || ||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  51883465 aattttccttacatttgcagttttgtaacggttattgaacttataagctgaaacttattgcaggctgagtatagttgtgaattgttcatttgggatgatg 51883564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51883369 - 51883427
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttct 59  Q
    ||||||||||||| | |||||||||||| ||| |||||||||||||||| ||| |||||    
T  51883369 tgtggatttcaaatacagatgaaaatcctaagcgaaagttttggagatgccgattttct 51883427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7267 - 7337
Alignment:
Q  1 tgtggatttcaaacatagatgaaaatcccaagagaaagttttggagatgtcgaatttctggagtaagtgaa 71  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  7267 tgtggatttcaaacacagatgaaaatcccaagagaaagttttggagatgctgattttctggagtaagtgaa 7337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 7391 - 7436
Alignment:
Q  163 ttattgcaggctgagtatagttgtgagctgttcatttgggatgatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7391 ttattgcaggctgagtatagttgtgagctgttcatttgggatgatg 7436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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