View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_43 (Length: 217)
Name: NF10437_1D_low_43
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_43 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 24495028 - 24494827
Alignment:
| Q |
16 |
tctgaaaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggta |
115 |
Q |
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| T |
24495028 |
tctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagattgtcacagtagatggta |
24494929 |
T |
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| Q |
116 |
ggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494928 |
ggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtgg |
24494829 |
T |
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| Q |
216 |
at |
217 |
Q |
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|| |
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| T |
24494828 |
at |
24494827 |
T |
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Target: scaffold0003 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 86487 - 86292
Alignment:
| Q |
22 |
aaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaata |
121 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
86487 |
aaaatgaatatctatggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagattgtcacagtagatggtaggaata |
86388 |
T |
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| Q |
122 |
gtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggat |
217 |
Q |
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| T |
86387 |
gttggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggat |
86292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 18556964 - 18557131
Alignment:
| Q |
16 |
tctgaaaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggta |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556964 |
tctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagattgtcacagtagatggta |
18557063 |
T |
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| Q |
116 |
ggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
183 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18557064 |
ggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
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