View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_45 (Length: 214)

Name: NF10437_1D_low_45
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_45
NF10437_1D_low_45
[»] chr4 (7 HSPs)
chr4 (55-190)||(34290641-34290776)
chr4 (57-100)||(54335422-54335465)
chr4 (7-41)||(34290797-34290831)
chr4 (55-100)||(12329033-12329078)
chr4 (55-100)||(24680854-24680899)
chr4 (56-100)||(3703573-3703617)
chr4 (55-100)||(25812252-25812297)
[»] chr7 (1 HSPs)
chr7 (56-107)||(40591613-40591664)
[»] chr2 (2 HSPs)
chr2 (56-101)||(9711181-9711226)
chr2 (56-100)||(24145219-24145263)
[»] chr5 (8 HSPs)
chr5 (55-94)||(28976720-28976759)
chr5 (58-105)||(32109763-32109809)
chr5 (55-101)||(4639535-4639581)
chr5 (58-100)||(6706262-6706304)
chr5 (55-96)||(5506967-5507008)
chr5 (56-101)||(35924583-35924628)
chr5 (58-94)||(14613544-14613580)
chr5 (62-94)||(35757988-35758020)
[»] chr8 (1 HSPs)
chr8 (55-100)||(41667871-41667916)
[»] chr1 (4 HSPs)
chr1 (56-94)||(47059319-47059357)
chr1 (56-101)||(12369453-12369498)
chr1 (63-100)||(47059367-47059404)
chr1 (64-104)||(7172376-7172416)
[»] chr3 (2 HSPs)
chr3 (57-101)||(2535921-2535965)
chr3 (55-99)||(26851335-26851379)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 34290776 - 34290641
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaactttctaacaataccataaaattgggccataaaacagaaattgttcgaactaga 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34290776 atcatttccatgtgtttctaagaaacaatggatgtgagaacaacaactttctaacaataccataaaattgggccataaaacataaattgttcgaactaga 34290677  T
Q  155 aggaaacccagttgtagaaactggcctacagattgt 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  34290676 aggaaacccagttgtagaaactggcctacagattgt 34290641  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 54335465 - 54335422
Alignment:
Q  57 cattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  54335465 catttccatgtgtttctaagaaacaatggatgtgagaacaacaa 54335422  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 34290831 - 34290797
Alignment:
Q  7 tgttttgaagtcagtgatagttaactaccgcttag 41  Q
    |||||||||||||||||||||||||||||||||||    
T  34290831 tgttttgaagtcagtgatagttaactaccgcttag 34290797  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 12329033 - 12329078
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  12329033 atcattttcatgtgtttctaaaaaacaatggatgtcaaaacaacaa 12329078  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 24680854 - 24680899
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  24680854 atcattttcatgtgtttttaagaaacaatagatgtgaaaacaacaa 24680899  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 3703617 - 3703573
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  3703617 tcattttcatgtgtttctaaaaaacaatggatgttaaaacaacaa 3703573  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 25812297 - 25812252
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    ||||||| ||||||||||||  |||||||||||||||||| |||||    
T  25812297 atcatttccatgtgtttctagaaaacaatggatgtgagaaaaacaa 25812252  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 40591613 - 40591664
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaactttcta 107  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  40591613 tcattttcatgtgtttctaataaactatggatgtaagaacaacaactttcta 40591664  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 9711226 - 9711181
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaac 101  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  9711226 tcattttcatgtgtttctaagaaactatggatatgagaacaacaac 9711181  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 24145219 - 24145263
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    |||||| ||||||||||||||||| ||||||||| | ||||||||    
T  24145219 tcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 24145263  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 28976720 - 28976759
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaa 94  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28976720 atcattttcatgtatttctaagaaacaatggatgtgagaa 28976759  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 32109763 - 32109809
Alignment:
Q  58 attttcatgtgtttctaagaaacaatggatgtgagaacaacaactttc 105  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  32109763 attttcatgtgtttctta-aaacaatggatgtgagaacaacaactttc 32109809  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 4639535 - 4639581
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaac 101  Q
    |||||||||||||||||||||||||||||| | || | |||||||||    
T  4639535 atcattttcatgtgtttctaagaaacaatgaaggtcaaaacaacaac 4639581  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 6706304 - 6706262
Alignment:
Q  58 attttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    |||||||||||||| |||||||||||| ||||||||| |||||    
T  6706304 attttcatgtgtttataagaaacaatgaatgtgagaaaaacaa 6706262  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 5506967 - 5507008
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaaca 96  Q
    |||||||||| |||||||||| ||||||||||||||| ||||    
T  5506967 atcattttcacgtgtttctaaaaaacaatggatgtgaaaaca 5507008  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 35924628 - 35924583
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaac 101  Q
    |||||||||||| ||||||  ||| |||||||||||||||||||||    
T  35924628 tcattttcatgtttttctagaaaataatggatgtgagaacaacaac 35924583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 14613580 - 14613544
Alignment:
Q  58 attttcatgtgtttctaagaaacaatggatgtgagaa 94  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  14613580 attttcatgtgtttctaggaaacaatggatgcgagaa 14613544  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 35758020 - 35757988
Alignment:
Q  62 tcatgtgtttctaagaaacaatggatgtgagaa 94  Q
    ||||||||||||| |||||||||||||||||||    
T  35758020 tcatgtgtttctaggaaacaatggatgtgagaa 35757988  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 41667916 - 41667871
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||    
T  41667916 atcattttcatgtgtttctaagaaacaatagatgttaaaacaacaa 41667871  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 47059319 - 47059357
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaa 94  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  47059319 tcattttcatgtgtttttaagaaacaatgaatgtgagaa 47059357  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 12369498 - 12369453
Alignment:
Q  56 tcattttcatgtgtttctaagaaacaatggatgtgagaacaacaac 101  Q
    ||||||||| |||||| ||| ||||||||||||| |||||||||||    
T  12369498 tcattttcacgtgtttttaaaaaacaatggatgtaagaacaacaac 12369453  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 47059404 - 47059367
Alignment:
Q  63 catgtgtttctaagaaacaatggatgtgagaacaacaa 100  Q
    |||||||||||||||||||| || ||||||||||||||    
T  47059404 catgtgtttctaagaaacaaggggtgtgagaacaacaa 47059367  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 7172416 - 7172376
Alignment:
Q  64 atgtgtttctaagaaacaatggatgtgagaacaacaacttt 104  Q
    |||||||||||| |||||||||||||||||||  |||||||    
T  7172416 atgtgtttctaaaaaacaatggatgtgagaactgcaacttt 7172376  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 2535921 - 2535965
Alignment:
Q  57 cattttcatgtgtttctaagaaacaatggatgtgagaacaacaac 101  Q
    ||||| ||||||||||| | |||||||||||||||| ||||||||    
T  2535921 catttccatgtgtttctgaaaaacaatggatgtgaggacaacaac 2535965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 26851335 - 26851379
Alignment:
Q  55 atcattttcatgtgtttctaagaaacaatggatgtgagaacaaca 99  Q
    ||||||||||||||||| ||||||||||| ||||| | |||||||    
T  26851335 atcattttcatgtgtttttaagaaacaatagatgtcaaaacaaca 26851379  T

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