View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_46 (Length: 214)
Name: NF10437_1D_low_46
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 11804080 - 11804142
Alignment:
| Q |
34 |
atcatcaacctcctttcttctacgataggttgaaataatttggccagcttctcacgtgcctat |
96 |
Q |
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| T |
11804080 |
atcatcaacctcctttcttccacaataggttgaattaatttgaccagcttcttacgtgcctat |
11804142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 11817919 - 11817985
Alignment:
| Q |
34 |
atcatcaacctcctttcttctacgataggttgaaataatttggccagcttctcacgtgcctattata |
100 |
Q |
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| T |
11817919 |
atcatcgacctcctttcttctacaattggtttaactaatttggcaagcttctcccgtgcctattata |
11817985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 11819074 - 11819109
Alignment:
| Q |
173 |
ttgcaaataaaatggcacacatccaaacccagtatt |
208 |
Q |
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| T |
11819074 |
ttgcaaataaaatggcacacatccaaacccagtatt |
11819109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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