View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_47 (Length: 214)

Name: NF10437_1D_low_47
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_47
NF10437_1D_low_47
[»] chr8 (5 HSPs)
chr8 (1-193)||(4130134-4130326)
chr8 (60-193)||(4120112-4120245)
chr8 (36-193)||(4142514-4142671)
chr8 (60-185)||(4159557-4159682)
chr8 (57-193)||(4150553-4150689)
[»] chr7 (7 HSPs)
chr7 (61-185)||(20279703-20279827)
chr7 (112-185)||(20289456-20289529)
chr7 (127-176)||(20294871-20294920)
chr7 (142-185)||(20062380-20062423)
chr7 (112-176)||(20231771-20231835)
chr7 (112-176)||(20243843-20243907)
chr7 (145-185)||(20303903-20303943)
[»] chr5 (1 HSPs)
chr5 (110-170)||(28433416-28433476)
[»] chr3 (3 HSPs)
chr3 (119-170)||(1050700-1050751)
chr3 (119-170)||(1077602-1077653)
chr3 (119-170)||(1091481-1091532)
[»] chr2 (1 HSPs)
chr2 (112-170)||(2698252-2698310)
[»] chr4 (1 HSPs)
chr4 (129-185)||(40823639-40823695)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 4130134 - 4130326
Alignment:
Q  1 atgaacatgtattgctaaactttttgtcaaattcagtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgat 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130134 atgaacatgtattgctaaactttttgtcaaataaagtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgat 4130233  T
Q  101 aaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130234 aaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattg 4130326  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 4120112 - 4120245
Alignment:
Q  60 acttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatat 159  Q
    |||||||||||| ||||||||||| ||||||||  | |||||||||||  |||||||||| || || |||||||||||||||||||| ||||||||||||    
T  4120112 acttacaaagcctacaaggctaagtgaatcctcgctgtgataaaagctcgtatttcttcgcccactgacaatctctagcaataaaaccccaaagctatat 4120211  T
Q  160 acatctgatttctctgagaaaagtccccccattg 193  Q
    |||||||||||||| |||||||| ||| ||||||    
T  4120212 acatctgatttctcagagaaaagcccctccattg 4120245  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 4142514 - 4142671
Alignment:
Q  36 gtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctct 135  Q
    |||||| |||||| || || ||| |||||||||||| ||||||||||||||||||||  | |||||||||||  ||||||||||||| || |||| ||||    
T  4142514 gtaataaagacatcgactatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctct 4142613  T
Q  136 agcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattg 193  Q
    ||||||||||| || || ||||| ||||||||||||||||||||||| ||| ||||||    
T  4142614 agcaataaaactccgaaactatagacatctgatttctctgagaaaagcccctccattg 4142671  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 4159557 - 4159682
Alignment:
Q  60 acttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatat 159  Q
    |||||||||||||||||||||||||||||| || || || ||||||||  | |||||||| ||||| |||||||||| ||||||||| |||||||||||     
T  4159557 acttacaaagccaacaaggctaagagaatcttcgttgtggtaaaagctactgtttcttcggccgctaacaatctctaacaataaaactccaaagctataa 4159656  T
Q  160 acatctgatttctctgagaaaagtcc 185  Q
    |||||||||||||| || ||||||||    
T  4159657 acatctgatttctcagaaaaaagtcc 4159682  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 4150553 - 4150689
Alignment:
Q  57 tagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagcta 156  Q
    ||||||||||||||| ||||||||||||| |||||| |  ||| |||||||  ||||||||| |||||| |||||||| ||||||| ||| |||||||||    
T  4150553 tagacttacaaagcctacaaggctaagagtatcctcgtgatgagaaaagctactatttcttcttccgctaacaatctccagcaatagaaccccaaagcta 4150652  T
Q  157 tatacatctgatttctctgagaaaagtccccccattg 193  Q
    || ||||||||||| || |||||||| ||| ||||||    
T  4150653 tagacatctgatttttcagagaaaagcccctccattg 4150689  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 20279827 - 20279703
Alignment:
Q  61 cttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatata 160  Q
    |||||||| || ||||| || |||| || |||||| | |||||||||    |||||||  ||||| || |||||||| |  ||||||||||||||| | |    
T  20279827 cttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaacgatctctagtaccaaaacaccaaagctaaaaa 20279728  T
Q  161 catctgatttctctgagaaaagtcc 185  Q
    |||||||||||||||| ||||||||    
T  20279727 catctgatttctctgaaaaaagtcc 20279703  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 20289529 - 20289456
Alignment:
Q  112 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtcc 185  Q
    |||||||  ||||| | ||||||||| || ||||||||||||||| | ||||||||||||||||| || |||||    
T  20289529 tttcttctcccgctaataatctctagtaacaaaacaccaaagctaaagacatctgatttctctgaaaacagtcc 20289456  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 20294920 - 20294871
Alignment:
Q  127 acaatctctagcaataaaacaccaaagctatatacatctgatttctctga 176  Q
    |||||||||||||  ||||||||||||||| | |||||||||||||||||    
T  20294920 acaatctctagcatcaaaacaccaaagctaaaaacatctgatttctctga 20294871  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 20062380 - 20062423
Alignment:
Q  142 aaaacaccaaagctatatacatctgatttctctgagaaaagtcc 185  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  20062380 aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtcc 20062423  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 20231835 - 20231771
Alignment:
Q  112 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctga 176  Q
    ||||||| |||| | ||||||||||| |  || |||||||||||| | |||||||||||||||||    
T  20231835 tttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctga 20231771  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 20243907 - 20243843
Alignment:
Q  112 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctga 176  Q
    ||||||| |||| | ||||||||||| |  || |||||||||||| | |||||||||||||||||    
T  20243907 tttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctga 20243843  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 20303943 - 20303903
Alignment:
Q  145 acaccaaagctatatacatctgatttctctgagaaaagtcc 185  Q
    |||||||||||| | ||||||||||||||||| ||||||||    
T  20303943 acaccaaagctaaaaacatctgatttctctgaaaaaagtcc 20303903  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 28433476 - 28433416
Alignment:
Q  110 tatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 170  Q
    ||||||||  ||||||||  || ||||||||||| |||||||||||| |||||||||||||    
T  28433476 tatttctttttccgcttattatttctagcaataatacaccaaagctaaatacatctgattt 28433416  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 1050751 - 1050700
Alignment:
Q  119 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 170  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  1050751 gtccacttacaatctctagcaataatacgccaaagctaaatacatcagattt 1050700  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 1077653 - 1077602
Alignment:
Q  119 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 170  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  1077653 gtccacttacaatctctagcaataatacgccaaagctaaatacatcagattt 1077602  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 1091532 - 1091481
Alignment:
Q  119 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 170  Q
    |||| |||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  1091532 gtccacttacaatctctagtaataatacaccaaagctaaatacatcagattt 1091481  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 2698252 - 2698310
Alignment:
Q  112 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 170  Q
    ||||| || ||||| ||||||||||| | ||| |||||||| |||||||||||||||||    
T  2698252 tttctgcggccgctcacaatctctagtagtaatacaccaaaactatatacatctgattt 2698310  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 40823639 - 40823695
Alignment:
Q  129 aatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtcc 185  Q
    ||||||||| |  ||||||||||||||| | ||||||||||||||||| || |||||    
T  40823639 aatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaacagtcc 40823695  T

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