View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_5 (Length: 413)
Name: NF10437_1D_low_5
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 52836652 - 52836259
Alignment:
| Q |
19 |
acatcaaacacaacatatggcaaaggaaaatgaatctcctattcctattattaggtcaagcaatatataaccattagagaatccaccctctttgctgaag |
118 |
Q |
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| T |
52836652 |
acatcaaacacaacatatggcaaaggaaaatgaatctcctat-------attaggtcaagcaatatataaccattagagaatccaccctctttgctgaag |
52836560 |
T |
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| Q |
119 |
gtgaatgaccaaatttttaaagaggaaacatgtacctactcagacttcgaactttatcttctttggagcaggctggaggttacccacctgtaacagcaat |
218 |
Q |
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| T |
52836559 |
gtgaatgaccaaatttttaaagaggaaacatgtacctactcagactttgaactttatcttctttggagcaggctggaggttgcccacctgtaacagcaat |
52836460 |
T |
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| Q |
219 |
gagacataacatggtgaaaatcagagacatggacaatgaaaacaactaatcagtaaaagaaaggcaaaaaagctcacaatctggggacattcataatcaa |
318 |
Q |
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| T |
52836459 |
tagacataacatggtgaaaatcagagacatggacaatgaaaacaactaatcagtaaaagaaaggctaaaaagctcacaatctggggacattcataatcaa |
52836360 |
T |
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| Q |
319 |
tgccagcagcctctatcaat------gttttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagc |
412 |
Q |
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| T |
52836359 |
tgccagcagcctctatcattttccgacttttttgtcacgtttcataaccctgtcaaccaactttttgtgttcttccaatgttctttcctgaaaaggcagc |
52836260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 117 - 405
Target Start/End: Original strand, 48967386 - 48967683
Alignment:
| Q |
117 |
aggtgaatgaccaaatttttaaagaggaaacatgt-acctactcagacttcgaactttatcttctttggagcaggctggaggttacccacctgtaacagc |
215 |
Q |
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||||||||||| ||| ||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
48967386 |
aggtgaatgactaaacttttaaagaagaagcatgttacctactcagtcttcgaactttatcttctttggagcagactggaggttacccacctgcaacagc |
48967485 |
T |
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| Q |
216 |
aatgagacataacatg-gtgaaaatcagagacatggacaatgaaaacaactaatcagtaaaagaaaggc-aaaaaagctcacaatctggggacattcata |
313 |
Q |
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||| ||||||| |||| | || |||| ||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
48967486 |
aattagacatagcatgagaaaagatca-agaaatggactatcaaaacaactaatcagtcaaagaaaggcgaaaaaagctcacaatctcaggacattcata |
48967584 |
T |
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| Q |
314 |
atcaatgccagcagcctctatcaat-------gttttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaa |
405 |
Q |
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| T |
48967585 |
atcaatgccagcagcctctatctttttacgtcgttttttgtcacgcttcataactctatcaaccaactttttgtgttcttccaatgttctttcctgaaa |
48967683 |
T |
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