View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_51 (Length: 209)
Name: NF10437_1D_low_51
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 16859412 - 16859335
Alignment:
| Q |
78 |
tataaagtgaccattataatgtgaaagtgctagcatcccattgccacctagaaaaaacctcatccagaattctagaat |
155 |
Q |
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| T |
16859412 |
tataaagtgaccattataatgtgaaagtgctagcatcccattgccacctagaaaaaacctcatccagaaatctagaat |
16859335 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 16859299 - 16859262
Alignment:
| Q |
166 |
attactattgaaaaaacattaaaacgtgaatcatagtc |
203 |
Q |
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| T |
16859299 |
attactattgaaaaaacattaaaacgtgaatcatagtc |
16859262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 52582962 - 52583023
Alignment:
| Q |
13 |
gacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacag |
74 |
Q |
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| T |
52582962 |
gacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacag |
52583023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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