View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_1D_low_7 (Length: 392)

Name: NF10437_1D_low_7
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_1D_low_7
NF10437_1D_low_7
[»] chr2 (3 HSPs)
chr2 (24-356)||(30338633-30338966)
chr2 (24-102)||(30350900-30350978)
chr2 (285-321)||(22567646-22567682)
[»] chr5 (1 HSPs)
chr5 (274-319)||(6042156-6042201)
[»] chr3 (4 HSPs)
chr3 (272-321)||(51818981-51819030)
chr3 (292-321)||(22248937-22248966)
chr3 (272-319)||(26966526-26966574)
chr3 (274-322)||(42548128-42548176)
[»] chr8 (1 HSPs)
chr8 (285-319)||(17913583-17913617)
[»] chr6 (2 HSPs)
chr6 (273-319)||(11616240-11616286)
chr6 (273-319)||(11633950-11633996)
[»] chr1 (3 HSPs)
chr1 (274-315)||(27695814-27695856)
chr1 (285-321)||(51065854-51065890)
chr1 (281-321)||(52431621-52431661)
[»] chr7 (3 HSPs)
chr7 (274-307)||(39199390-39199423)
chr7 (252-319)||(38022600-38022668)
chr7 (285-321)||(47083099-47083135)
[»] chr4 (1 HSPs)
chr4 (285-321)||(24679748-24679784)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 30338633 - 30338966
Alignment:
Q  24 ttaattatgctcttttccaaagtagacaaacgagagaaacctggatacattgcttgttttatttgtgtaagtgattctattttttatggttttctaaatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30338633 ttaattatgctcttttccaaagtagacaaacgagagaaacctggatacattgcttgttttatttgtgtaagtgattctattttttatggttttctaaatt 30338732  T
Q  124 attaggaattgnnnnnnntatcaatgattagtttatggaaattttacaagttattttacaaatggatatccatccatatttgtttagagttggtttttta 223  Q
    ||||| |||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30338733 attagtaattgaaaaaaatatcaatgattagtttatggaaattttacaagtttttttacaaatggatatccatccatatttgtttagagttggtttttta 30338832  T
Q  224 ggatcaactttgtcatacactaatgataatcggtgtttccgaggtacggattaaagatact-aaaaaataaattatatagtagttattgtattgaaatta 322  Q
    |||||||||||||||| || ||||  ||||| ||| | |||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30338833 ggatcaactttgtcatgcattaatattaatcagtgctcccgagagacggattaaagatactaaaaaaataaattatataatagttattgtattgaaatta 30338932  T
Q  323 cacaatctatgaaaatatcaacaaagttttcttt 356  Q
    ||||||| ||||||| ||||||||||||||||||    
T  30338933 cacaatccatgaaaaaatcaacaaagttttcttt 30338966  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 30350900 - 30350978
Alignment:
Q  24 ttaattatgctcttttccaaagtagacaaacgagagaaacctggatacattgcttgttttatttgtgtaagtgattcta 102  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  30350900 ttaattatgctctcttctaaagcagacaaacgagagaaacctggattcattgcttgtactatttttgtaagtggttcta 30350978  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 22567646 - 22567682
Alignment:
Q  285 aaaaaataaattatatagtagttattgtattgaaatt 321  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  22567646 aaaaaagaaattatatagtagttaatgtattgaaatt 22567682  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 6042201 - 6042156
Alignment:
Q  274 ttaaagatactaaaaaataaattatatagtagttattgtattgaaa 319  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||    
T  6042201 ttaaagatactaaaaaaaaaattatatagtaattattgcattgaaa 6042156  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 51819030 - 51818981
Alignment:
Q  272 gattaaagatactaaaaaataaattatatagtagttattgtattgaaatt 321  Q
    |||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  51819030 gattaaggatactaaaaagaaaattatttagtagttattgtattgaaatt 51818981  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 22248937 - 22248966
Alignment:
Q  292 aaattatatagtagttattgtattgaaatt 321  Q
    ||||||||||||||||||||||||||||||    
T  22248937 aaattatatagtagttattgtattgaaatt 22248966  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 26966526 - 26966574
Alignment:
Q  272 gattaaagatactaaaaaat-aaattatatagtagttattgtattgaaa 319  Q
    |||||| ||||||||||||  |||||||||||||||||||| |||||||    
T  26966526 gattaaggatactaaaaaaagaaattatatagtagttattgcattgaaa 26966574  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 42548128 - 42548176
Alignment:
Q  274 ttaaagatactaaaaaataaattatatagtagttattgtattgaaatta 322  Q
    |||||||||  |||||| ||||||||||||||||| || ||||||||||    
T  42548128 ttaaagatatgaaaaaagaaattatatagtagttaatgcattgaaatta 42548176  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 17913583 - 17913617
Alignment:
Q  285 aaaaaataaattatatagtagttattgtattgaaa 319  Q
    ||||||||||||||||||||||||||| |||||||    
T  17913583 aaaaaataaattatatagtagttattgcattgaaa 17913617  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 11616286 - 11616240
Alignment:
Q  273 attaaagatactaaaaaataaattatatagtagttattgtattgaaa 319  Q
    ||||| ||||||||||||  ||||||||||||||||||| |||||||    
T  11616286 attaaggatactaaaaaagtaattatatagtagttattgcattgaaa 11616240  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 11633950 - 11633996
Alignment:
Q  273 attaaagatactaaaaaataaattatatagtagttattgtattgaaa 319  Q
    ||||| ||||||||||||  ||||||||||||||||||| |||||||    
T  11633950 attaaggatactaaaaaagtaattatatagtagttattgcattgaaa 11633996  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 27695814 - 27695856
Alignment:
Q  274 ttaaagatactaaaaaataaa-ttatatagtagttattgtatt 315  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  27695814 ttaaagatactaaaaaatgaagttatatagtagttattgtatt 27695856  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 51065890 - 51065854
Alignment:
Q  285 aaaaaataaattatatagtagttattgtattgaaatt 321  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  51065890 aaaaagtaaattatatagtagttaatgtattgaaatt 51065854  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 52431621 - 52431661
Alignment:
Q  281 tactaaaaaataaattatatagtagttattgtattgaaatt 321  Q
    |||||||||| ||||||||||||||||| || |||||||||    
T  52431621 tactaaaaaaaaaattatatagtagttaatgcattgaaatt 52431661  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 39199423 - 39199390
Alignment:
Q  274 ttaaagatactaaaaaataaattatatagtagtt 307  Q
    |||| |||||||||||||||||||||||||||||    
T  39199423 ttaaggatactaaaaaataaattatatagtagtt 39199390  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 38022668 - 38022600
Alignment:
Q  252 atcggtgtttccgaggtacggattaaagatactaaaaaataaa-ttatatagtagttattgtattgaaa 319  Q
    |||||||| |||||||| |   |||| |||||||| ||| ||| |||||||||||||||||||||||||    
T  38022668 atcggtgtctccgaggttctagttaaggatactaataaagaaaattatatagtagttattgtattgaaa 38022600  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 47083099 - 47083135
Alignment:
Q  285 aaaaaataaattatatagtagttattgtattgaaatt 321  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  47083099 aaaaaagaaattatatagtagttaatgtattgaaatt 47083135  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 24679784 - 24679748
Alignment:
Q  285 aaaaaataaattatatagtagttattgtattgaaatt 321  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  24679784 aaaaaagaaattatatagtagttaatgtattgaaatt 24679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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