View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_9 (Length: 371)
Name: NF10437_1D_low_9
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 206 - 364
Target Start/End: Complemental strand, 50337843 - 50337685
Alignment:
| Q |
206 |
aaatagtgagttcgattagtctccaaaattgaagtagttaacctgagacatttaaaagtgtttgagcataagattcaaggttctaactaactactaacat |
305 |
Q |
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| T |
50337843 |
aaatagtgagtttgattagtctccaaaattgaagtagttaacctgagacatttaaaagtgtttgagcataagattcaaggttctaactaactactaacat |
50337744 |
T |
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| Q |
306 |
ctgtacataataaaagtttgaacaatttaacaaacaggataatccaaaaatgttcatct |
364 |
Q |
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| T |
50337743 |
ctgtaaataaaaaaagtttgaacaatttaacaaacaggataatccaaaaatgttcatct |
50337685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 50338024 - 50337879
Alignment:
| Q |
22 |
atacggagttcaaactccgaattctctacacttaaggtgtgtgagtctagccacaagactaattgattaaaaaagtcggtgcaacattagttgccataga |
121 |
Q |
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| T |
50338024 |
atacggagttcaaactccaaattctctacacttaaggtgtgtgagtctagccacaagactaattgattaaaaaagtcggtgcaacattagttgccataga |
50337925 |
T |
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| Q |
122 |
aaaaataccaaaaccttggatcgatgaagtacaacattctcaactg |
167 |
Q |
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| T |
50337924 |
aaaaataccaaaaccttggatcgataaagtacaacattctcaactg |
50337879 |
T |
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