View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_2D_low_12 (Length: 289)
Name: NF10437_2D_low_12
Description: NF10437_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_2D_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 114583 - 114863
Alignment:
| Q |
1 |
atcatcaagtgactccttagcatacttaaataataaaactattcttcaacattctccagaaatcaaggttgtagattcacaaccctcctttctacaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
114583 |
atcatcaagtgactccttagcatacttaaataataaaactattcttcaacattctccagaaaggaaggttgtagattcacaaccctcctttctacaacaa |
114682 |
T |
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| Q |
101 |
catcattcgagatctgatcattccaaacgaggcaaaaggtacgtacgtct------ttatgct---tgcttggtgtctctaatactagagagatgcaaat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||| ||||| |
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| T |
114683 |
catcattcgagatctgatcattccaaacgaggcaaaaggtacgtacgtatatgaaattagtctttatgcttggtgtctctaatactagagagatacaaat |
114782 |
T |
|
| Q |
192 |
tatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgttgtg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114783 |
tatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgttgtg |
114863 |
T |
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