View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_2D_low_5 (Length: 697)

Name: NF10437_2D_low_5
Description: NF10437_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_2D_low_5
NF10437_2D_low_5
[»] chr3 (1 HSPs)
chr3 (18-686)||(55053957-55054625)


Alignment Details
Target: chr3 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 18 - 686
Target Start/End: Original strand, 55053957 - 55054625
Alignment:
Q  18 agaaagatgccaatgcgcttttaattattcatcaatatgctactggtttttctttcttaatttattattactgtactgagatacaaatttaaaacgcctt 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55053957 agaaagatgccaatgcgcttgtaattattcatcaatatgctactggtttttctttcttaatttattatcactgtactgagatacaaatttaaaacgcctt 55054056  T
Q  118 tgtcagtgttcctttactatcattgttcatcgattgtgtgtgtgtttttaattttaacatggttttgatgtatatgtcagttcctttaagaactcagttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054057 tgtcagtgttcctttactatcattgttcatcgattgtgtgtgtgtttttaattttaacatggttttgatgtatatgtcagttcctttaagaactcagttt 55054156  T
Q  218 taatttccacatttgaatcaatcattattcagaataagtcaaaagggaatgccgtcaaaaacaaagatggtggtgataaatgtgttcagtctgatgacaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054157 taatttccacatttgaatcaatcattattcagaataagtcaaaagggaatgccgtcaaaaacaaagatggtggtgataaatgtgttcagtctgatgacaa 55054256  T
Q  318 tggttcttgtgcggttacatctgagttggaaaacaaagacgatggtgacaaacaccatcagtctgatgatgacggctcttgtgaggttcctgctgactca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054257 tggttcttgtgcggttacatctgagttggaaaacaaagacgatggtgacaaacaccatcagtctgatgatgacggctcttgtgaggttcctgctgactca 55054356  T
Q  418 gattctaagttagaacgctttgtagaagttataaaagatgatgatggcattaaaagagaacttgaacctgatataccttgtccccaaaagaaaagaaaaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054357 gattctaagttagaacgctttgtagaagttataaaagatgatgatggcattaaaagagaacttgaacctgatataccttgtccccaaaagaaaagaaaaa 55054456  T
Q  518 ccgcagaaaattgtgaagatgaggagacggaaaatgaaggtcataaaatcatcttttactttagtgattataatctacggttaatattttttcaatgttt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55054457 ccgcagaaaattgtgaagatgaggagacggaaaatgaaggtcataaaatcatcttttactttagtgattataatctatggttaatattttttcaatgttt 55054556  T
Q  618 aatattcctttgcattcaattctagttgaacttagcttcatattgctgaaacagttgtgagtgttgatg 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55054557 aatattcctttgcattcaattctagttgaacttagcttcatattgctgaaacagttgtgagtgtcgatg 55054625  T

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