View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_2D_low_6 (Length: 413)

Name: NF10437_2D_low_6
Description: NF10437_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_2D_low_6
NF10437_2D_low_6
[»] chr8 (2 HSPs)
chr8 (9-405)||(2905996-2906392)
chr8 (9-405)||(2853968-2854364)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 2905996 - 2906392
Alignment:
Q  9 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905996 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 2906095  T
Q  109 agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906096 agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 2906195  T
Q  209 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2906196 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttg 2906295  T
Q  309 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgtccatc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2906296 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatc 2906392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 2853968 - 2854364
Alignment:
Q  9 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2853968 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 2854067  T
Q  109 agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2854068 agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 2854167  T
Q  209 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg 308  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  2854168 ctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttg 2854267  T
Q  309 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgtccatc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2854268 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatc 2854364  T

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