View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_high_2 (Length: 429)
Name: NF10437_high_2
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 148 - 386
Target Start/End: Original strand, 33877930 - 33878168
Alignment:
| Q |
148 |
ccatttatactttagtagaaaactaggaaaataggaaacacaatagaagggtagaggacaagacatgcatgcaatggaaccattgttattctagagtact |
247 |
Q |
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| T |
33877930 |
ccatttatactttagtagaaaactaggaaaataggaaacacaatagaagggtagaggacaagacatgcatgcaatggaaccattattattctagagtact |
33878029 |
T |
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| Q |
248 |
gtcattgcattatcccgtaggataacaagtccctatcttctgagttagaccaaatgattatttttagaaaaatgctaacaagcgtctttaggatattatt |
347 |
Q |
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| T |
33878030 |
gtcattgcattatcccgtaggataacaagtccctatcttctgagttagaccaaatgattatttttagaaaaatgctaacaaccgtctttaggatattgtt |
33878129 |
T |
|
| Q |
348 |
taagcatataaaaatagtaactttattttaaaaattgtg |
386 |
Q |
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| T |
33878130 |
taagcatataaaaatagtaactttattttaaaaattgtg |
33878168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 33884586 - 33884669
Alignment:
| Q |
148 |
ccatttatactttagtagaaaactaggaaaataggaaacacaatagaagggtagaggacaagacatgcatgcaatggaaccatt |
231 |
Q |
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| T |
33884586 |
ccatttatactttggtagaaaactaggaaaataggaaagacaatagaatgatagaggacgagacatgcatgcaatggaaccatt |
33884669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 33877816 - 33877874
Alignment:
| Q |
32 |
tactataaaatgtgaatccctacatagatttcaattatgtcaaagaattaccctcagca |
90 |
Q |
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| T |
33877816 |
tactataaaatgtgaatccctacatagatttcaattatgtcaaagaattaccctcagca |
33877874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 33883973 - 33884008
Alignment:
| Q |
52 |
tacatagatttcaattatgtcaaagaattaccctca |
87 |
Q |
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| T |
33883973 |
tacatagatttcaattatgtcaaagaattaccctca |
33884008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 564890 - 564953
Alignment:
| Q |
308 |
tttttagaaaaatgctaacaagcgtctttaggatattatttaagcatataaaaatagtaacttt |
371 |
Q |
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| T |
564890 |
ttttaagaaaaatgctaacaaatgtccttaggacattgtttaagcatctaaaaatagtaacttt |
564953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 55969840 - 55969898
Alignment:
| Q |
312 |
tagaaaaatgctaacaagcgtctttaggatattatttaagcatataaaaatagtaacttt |
371 |
Q |
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|||||||||||||||||| || || ||| |||| ||||||||||||||||||| |||||| |
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| T |
55969840 |
tagaaaaatgctaacaagtgt-ttaagggtattgtttaagcatataaaaatagcaacttt |
55969898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 33640820 - 33640855
Alignment:
| Q |
325 |
acaagcgtctttaggatattatttaagcatataaaa |
360 |
Q |
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| T |
33640820 |
acaagcgtctttaggatattgtttaagcatataaaa |
33640855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 29688366 - 29688329
Alignment:
| Q |
316 |
aaaatgctaacaagcgtctttaggatattatttaagca |
353 |
Q |
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| T |
29688366 |
aaaatgctaacaagcgtctttaggacattttttaagca |
29688329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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