View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_high_3 (Length: 424)
Name: NF10437_high_3
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 27506655 - 27506263
Alignment:
| Q |
20 |
ggctagtcgcaaatgatgcccgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcac |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27506655 |
ggctagtcgcaaatgatgcctgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcac |
27506556 |
T |
|
| Q |
120 |
aaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagttactaatattctttg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27506555 |
aaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagttactaatattctttg |
27506456 |
T |
|
| Q |
220 |
caaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattc |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27506455 |
caaacctaattccaagataaattattgtttgaaagaattaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattc |
27506356 |
T |
|
| Q |
320 |
aacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27506355 |
aacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 31 - 415
Target Start/End: Original strand, 27486137 - 27486524
Alignment:
| Q |
31 |
aatgatgcccgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaa-atttag |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||| ||||| |||||| |
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| T |
27486137 |
aatgatgcccgtcgaataacatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttag |
27486236 |
T |
|
| Q |
130 |
aagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagttactaatattctttgcaaacctaat |
229 |
Q |
| |
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|||||| |||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
27486237 |
aagaatgtaactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaat |
27486336 |
T |
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| Q |
230 |
tccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcat |
327 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||||||||||||| |
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| T |
27486337 |
tccaagctaaattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattataccaccaccctttcaaattcaacctcat |
27486436 |
T |
|
| Q |
328 |
atttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtccatct |
415 |
Q |
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|||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
27486437 |
attttttcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 31 - 412
Target Start/End: Original strand, 27479077 - 27479461
Alignment:
| Q |
31 |
aatgatgcccgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaa-atttag |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||| ||| ||| ||||| |||||| |
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| T |
27479077 |
aatgatgcccgtcgaataacatttaaacggaaacccatttttggtgattgtttgagagagaagaacaaactcaacaaagtaaatatctcaaaaaatttag |
27479176 |
T |
|
| Q |
130 |
aagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagttactaatattctttgcaaacctaat |
229 |
Q |
| |
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|||||| |||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
27479177 |
aagaatgtaactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaat |
27479276 |
T |
|
| Q |
230 |
tccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcat |
327 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
27479277 |
tccaagctaaattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcat |
27479376 |
T |
|
| Q |
328 |
atttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
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|||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
27479377 |
attttatcatctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 186 - 383
Target Start/End: Complemental strand, 27501137 - 27500939
Alignment:
| Q |
186 |
ttgtaagtatatttatagttactaatattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg- |
284 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
285 |
gttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgt |
383 |
Q |
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||||| | |||||||||| |||||||||||| | ||||| | |||||||||||||||||| | ||||||||||| ||||| |||||||||||||||| |
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| T |
27501037 |
gttgttttaagattgtaccccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgt |
27500939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 27526958 - 27526881
Alignment:
| Q |
186 |
ttgtaagtatatttatagttactaatattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaagg |
263 |
Q |
| |
|
||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27526958 |
ttgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaattattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
| Q |
350 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattat |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
27468898 |
acttcataattttgtaaacatgcttcagacatgttttcttcattat |
27468943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 27489721 - 27489628
Alignment:
| Q |
319 |
caacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
||||||||||||| |||||||||||| | |||| |||||||||||||||| || |||||||| ||||||||||| ||| || |||||||| |
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| T |
27489721 |
caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 27524102 - 27524041
Alignment:
| Q |
351 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||||||| | | |||||||||||| |
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| T |
27524102 |
cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 27514472 - 27514410
Alignment:
| Q |
350 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |||||| | | |||||||||||| |
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|
| T |
27514472 |
acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
| Q |
355 |
ataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | | || ||||||||| |
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|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
353 |
tcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||| | |||| |||| |||| |
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|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
351 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
412 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| ||||||||||| | | |||||||||||| |
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|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
| Q |
355 |
ataattttgtaaacatgtttcagacatgtcttcttcattat |
395 |
Q |
| |
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|||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattat |
27476173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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