View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_high_4 (Length: 331)
Name: NF10437_high_4
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_high_4 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 21934742 - 21934429
Alignment:
| Q |
2 |
atgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcggactggttgtcaagttcacaccatttgctccccatcacgacttcgacga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21934742 |
atgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcgggctggttgtcaaattcacaccatttgctccccatcatgacttcgacga |
21934643 |
T |
|
| Q |
102 |
tgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtgga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21934642 |
tgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattaggtgagaaagacaccaagagtgga |
21934543 |
T |
|
| Q |
202 |
agaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataatatac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21934542 |
agaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataatatac |
21934443 |
T |
|
| Q |
302 |
aatggtgtcctaca |
315 |
Q |
| |
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|||||||||||||| |
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| T |
21934442 |
aatggtgtcctaca |
21934429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 272
Target Start/End: Complemental strand, 21370775 - 21370579
Alignment:
| Q |
76 |
tttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagat |
175 |
Q |
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||||||||||||||||| |||||| || ||| ||||||||||||| | | | | |||||||||||| | ||||| ||||||||||||||||| || |
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| T |
21370775 |
tttgctccccatcacgatgacgacgaggtgaggcttaacagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaat |
21370676 |
T |
|
| Q |
176 |
tgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtaga |
272 |
Q |
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||||||||| ||| | | | |||||| || || |||||| ||| | |||||||| ||| |||||| | |||||||||||||| ||||||||| |
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| T |
21370675 |
tgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcctttggtaacttctttaagattgtaga |
21370579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 21403940 - 21403822
Alignment:
| Q |
151 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
250 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
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| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
|
| Q |
251 |
gtaacttctttaggattgt |
269 |
Q |
| |
|
||||||||||||||||||| |
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| T |
21403840 |
gtaacttctttaggattgt |
21403822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 21798432 - 21798314
Alignment:
| Q |
151 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
250 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
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| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
|
| Q |
251 |
gtaacttctttaggattgt |
269 |
Q |
| |
|
||||||||||||||||||| |
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| T |
21798332 |
gtaacttctttaggattgt |
21798314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 33990 - 34106
Alignment:
| Q |
97 |
gacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaaga |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| | | || ||||||||| || |||||||| ||||||||||| |||||||| | | || |
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|
| T |
33990 |
gacgatgttaggcttaacagagacttgagagtaacattcctaacctccacaagttgtgggcagtcaacagactggagattgggcgagaaagatgcaacga |
34089 |
T |
|
| Q |
197 |
gtggaagaaggttgatt |
213 |
Q |
| |
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||||||| ||||||||| |
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| T |
34090 |
gtggaaggaggttgatt |
34106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 15145 - 14988
Alignment:
| Q |
64 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
163 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||| |||||||| ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
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|
| T |
15145 |
aagttcactccttttgctcctcatcatgatgatgacaatgttaggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
15046 |
T |
|
| Q |
164 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgg |
221 |
Q |
| |
|
|||| |||||||| ||||||||||| | | |||||||| || |||||| ||||||| |
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|
| T |
15045 |
cagactggagattaggtgagaaagatgctacaagtggaaggagattgattgtcactgg |
14988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 26150 - 25996
Alignment:
| Q |
64 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
163 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||| ||||| || ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
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|
| T |
26150 |
aagttcactccttttgctcctcatcatgatgatgacaatgttgggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
26051 |
T |
|
| Q |
164 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcac |
218 |
Q |
| |
|
|||| |||||||| ||||||||||| | | |||||||| ||||||||| |||| |
|
|
| T |
26050 |
cagactggagattaggtgagaaagatgctacaagtggaaggaggttgattgtcac |
25996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 4286742 - 4286855
Alignment:
| Q |
100 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
199 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
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|
| T |
4286742 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4286841 |
T |
|
| Q |
200 |
gaagaaggttgatt |
213 |
Q |
| |
|
|||| ||| ||||| |
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|
| T |
4286842 |
gaaggaggctgatt |
4286855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 4295213 - 4295326
Alignment:
| Q |
100 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
199 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
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|
| T |
4295213 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4295312 |
T |
|
| Q |
200 |
gaagaaggttgatt |
213 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
4295313 |
gaaggaggctgatt |
4295326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 30902756 - 30902687
Alignment:
| Q |
138 |
agcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaagg |
207 |
Q |
| |
|
|||||| |||| |||||||||||| || ||||||| ||| ||||| | ||| || ||||||||||||||| |
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|
| T |
30902756 |
agcttcttcaatttgtgtacaatccactgaatggaaattaggtgatagagatactaagagtggaagaagg |
30902687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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