View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_high_5 (Length: 312)
Name: NF10437_high_5
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 37155774 - 37155486
Alignment:
| Q |
12 |
atcaccaacaagcaacatggtaatagcgacaatctaacaaagaaaacaatggttatcagtatattacgatacatgcaagctgtatctcaatgtgatgctg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
37155774 |
atcaccaacaagcaacatggtaatagcgacaatctaacaaagaaaacaatggttatcagtatattacgatacatgcaagctgtatctcattgtgatactg |
37155675 |
T |
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| Q |
112 |
aattcaattcaatcggtacaaatctttaccgtgtatctattttgacatgaatcccaattcattctgatgaattgccacctaaacttagtgtaactacttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37155674 |
aattcaattcaatcggtacaaatctttaccgtgtatctattttgacatgaatcccaattcgttctgatgaattgccacctaaacttagtgtaactacttt |
37155575 |
T |
|
| Q |
212 |
cnnnnnnngttgttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattattactaggttc |
300 |
Q |
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| T |
37155574 |
ctttttttgttgttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattattactaggttc |
37155486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 37201129 - 37200841
Alignment:
| Q |
12 |
atcaccaacaagcaacatggtaatagcgacaatctaacaaagaaaacaatggttatcagtatattacgatacatgcaagctgtatctcaatgtgatgctg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
37201129 |
atcaccaacaagcaacatggtaatagcgacaatctaacaaagaaaacaatggttatcagtatattacgatacatgcaagctgtatctcattgtgatactg |
37201030 |
T |
|
| Q |
112 |
aattcaattcaatcggtacaaatctttaccgtgtatctattttgacatgaatcccaattcattctgatgaattgccacctaaacttagtgtaactacttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37201029 |
aattcaattcaatcggtacaaatctttaccgtgtatctattttgacatgaatcccaattcgttctgatgaattgccacctaaacttagtgtaactacttt |
37200930 |
T |
|
| Q |
212 |
cnnnnnnngttgttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattattactaggttc |
300 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37200929 |
ctttttttgttgttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattattactaggttc |
37200841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 52750189 - 52750254
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaatta |
289 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| ||||| |
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| T |
52750189 |
ttgtcaattttgtataaccaaccacttttcttttgtcatttgatatttaacttgaatcttgaatta |
52750254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 41438123 - 41438067
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaat |
280 |
Q |
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|||||||||||||||| |||| |||||||||||||| |||| ||| ||||||||||| |
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| T |
41438123 |
ttgtcaattttgtatagccaaacagttttcttttgtcatttaatatatgacttgaat |
41438067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 5912636 - 5912703
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattatt |
291 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||| |||||||| || | ||||||||| ||||||| |
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| T |
5912636 |
ttgtcaactttgtataaccaaccccttttcttttgtcatttgatatataatttgaatcttgaattatt |
5912703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 30035512 - 30035562
Alignment:
| Q |
241 |
ccaaccagttttcttttgttatttgatacatgacttgaatcttcaattatt |
291 |
Q |
| |
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||||||| ||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
30035512 |
ccaaccatttttcttttgtcatttgatatatgacttgaatctttaattatt |
30035562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 40756709 - 40756775
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaattat |
290 |
Q |
| |
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||||||| ||||||||| || ||| |||||||||| ||||||| |||||||||||||| |||||| |
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| T |
40756709 |
ttgtcaactttgtataatcatccacctttcttttgtcatttgatttatgacttgaatctttaattat |
40756775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 30035336 - 30035440
Alignment:
| Q |
60 |
atggttatcagtatattacgatacatgcaagctgtatctcaatgtgatgctgaattcaattcaatcggtacaaatctttaccgtgtatctattttgacat |
159 |
Q |
| |
|
|||||||||||||| ||| |||||||| || |||||||||| || || |||| |||||||||| ||||||||| | || ||||||||| ||||| |
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| T |
30035336 |
atggttatcagtatcttatgatacatgtgagtcgtatctcaattcaatacttaattgaattcaatcgatacaaatctcaagtgtatatctatttggacat |
30035435 |
T |
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| Q |
160 |
gaatc |
164 |
Q |
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||||| |
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| T |
30035436 |
gaatc |
30035440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 6179193 - 6179136
Alignment:
| Q |
232 |
tttgtataaccaaccagttttcttttgttatttgatacatgacttgaatcttcaatta |
289 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || ||||| |||| ||||| |
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| T |
6179193 |
tttgtataaccaaccacttttcttttgttatttgataattggcttgattcttgaatta |
6179136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6179370 - 6179318
Alignment:
| Q |
55 |
aaacaatggttatcagtatattacgatacatgcaagctgtatctcaatgtgat |
107 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||| ||||||||||| |||| |
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| T |
6179370 |
aaaccatggttattagtatcttacgataaatgcaagttgtatctcaatttgat |
6179318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 1402441 - 1402504
Alignment:
| Q |
220 |
gttgttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatctt |
283 |
Q |
| |
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|||||||||||||||||||| |||| || |||| |||||| ||||||| ||| |||||||||| |
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| T |
1402441 |
gttgttgtcaattttgtatagccaaacacttttattttgtcatttgatttatggcttgaatctt |
1402504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 6381199 - 6381242
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgat |
267 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||| |
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|
| T |
6381199 |
ttgtcaaatttgtataaccaaccacttttcttttgtcatttgat |
6381242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 6428879 - 6428936
Alignment:
| Q |
224 |
ttgtcaattttgtataaccaaccagttttcttttgttatttgatacatgacttgaatc |
281 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||||| |||||||||||| |
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|
| T |
6428879 |
ttgtcaaatttgcataaccaaccacgtttcttttgtcatttgatttatgacttgaatc |
6428936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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