View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_low_1 (Length: 512)
Name: NF10437_low_1
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 16511019 - 16511495
Alignment:
| Q |
18 |
atgaaggctcgcaagcgggtgcttaaagtatgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaat |
117 |
Q |
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| T |
16511019 |
atgaaggctcgaaagcgggtgcttaaagtatgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaat |
16511118 |
T |
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| Q |
118 |
tgtgtattgaatcgaatatcattattgtaaatgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagc |
217 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511119 |
tgtgtattgaattgaatgtcattattgtaaatgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagc |
16511218 |
T |
|
| Q |
218 |
ttgactcagatgaagtttcagtaattcctgtcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgaggatgaacaagcactttcgga |
317 |
Q |
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| T |
16511219 |
ttgactcagatgaagtttcagtaattcctgtcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgaggatgaacaagcactttcgga |
16511318 |
T |
|
| Q |
318 |
gtcagctttgaacaaacttgttggagctgcagaagtctttgacctggaggtatataaaatgtgttccaatttcaattgtttggctgcgacttctctattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511319 |
gtcagctttgaacaaacttgttggagctgcagaagtctttgacctggaggtatataaaatgtgttccaatttcaattgtttggctgcgacttctctattg |
16511418 |
T |
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| Q |
418 |
cgtaactgacctttttatgtctttcacatctttaggagaaggaagccccaaagacactgatgtgtagtctaaagcct |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511419 |
tgtaactgacctttttatgtctttcacatctttaggagaaggaagccccaaagacactgatgtgtagtctaaagcct |
16511495 |
T |
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