View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_low_10 (Length: 224)

Name: NF10437_low_10
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_low_10
NF10437_low_10
[»] chr5 (7 HSPs)
chr5 (13-223)||(34599487-34599708)
chr5 (98-215)||(2143238-2143352)
chr5 (123-215)||(29531935-29532025)
chr5 (123-201)||(38458681-38458758)
chr5 (101-215)||(37704980-37705092)
chr5 (98-223)||(13953400-13953523)
chr5 (123-183)||(41232990-41233049)
[»] chr1 (10 HSPs)
chr1 (13-223)||(363615-363834)
chr1 (113-216)||(29954874-29954976)
chr1 (129-215)||(620653-620738)
chr1 (155-217)||(43816221-43816283)
chr1 (113-211)||(47600545-47600642)
chr1 (162-216)||(47726483-47726537)
chr1 (162-216)||(47747789-47747843)
chr1 (118-182)||(802197-802260)
chr1 (163-216)||(26706233-26706286)
chr1 (123-216)||(46530283-46530375)
[»] chr4 (9 HSPs)
chr4 (13-216)||(20141745-20141958)
chr4 (125-219)||(22519424-22519517)
chr4 (98-216)||(31095165-31095282)
chr4 (151-216)||(51580036-51580101)
chr4 (103-223)||(49291183-49291301)
chr4 (155-206)||(42508292-42508343)
chr4 (101-183)||(2803280-2803362)
chr4 (113-183)||(34717482-34717550)
chr4 (101-142)||(42676798-42676839)
[»] chr7 (9 HSPs)
chr7 (101-206)||(3218111-3218216)
chr7 (123-219)||(48447338-48447433)
chr7 (117-216)||(41331208-41331306)
chr7 (123-218)||(3681252-3681346)
chr7 (101-183)||(21920966-21921047)
chr7 (162-223)||(12422262-12422323)
chr7 (101-218)||(18128399-18128515)
chr7 (101-218)||(20389742-20389855)
chr7 (112-148)||(32857928-32857964)
[»] chr6 (14 HSPs)
chr6 (112-219)||(32548125-32548231)
chr6 (98-216)||(196096-196214)
chr6 (98-215)||(16419694-16419810)
chr6 (112-220)||(29693281-29693388)
chr6 (112-219)||(33547866-33547971)
chr6 (112-216)||(28477383-28477486)
chr6 (100-216)||(29789823-29789938)
chr6 (155-214)||(7202360-7202419)
chr6 (123-222)||(17411156-17411254)
chr6 (160-215)||(10544155-10544210)
chr6 (155-215)||(29902439-29902499)
chr6 (101-148)||(12458339-12458386)
chr6 (101-218)||(9405238-9405354)
chr6 (162-215)||(11324166-11324219)
[»] chr3 (7 HSPs)
chr3 (123-206)||(44291113-44291195)
chr3 (123-215)||(30534545-30534636)
chr3 (155-215)||(53509369-53509428)
chr3 (123-218)||(51265768-51265862)
chr3 (117-182)||(29756223-29756286)
chr3 (154-223)||(1662180-1662249)
chr3 (174-215)||(50898908-50898949)
[»] chr2 (5 HSPs)
chr2 (113-215)||(8198530-8198631)
chr2 (113-215)||(8203290-8203391)
chr2 (113-215)||(4558796-4558897)
chr2 (101-215)||(13323747-13323860)
chr2 (102-179)||(42054120-42054196)
[»] chr8 (2 HSPs)
chr8 (113-183)||(27533114-27533182)
chr8 (113-148)||(37064640-37064675)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 34599708 - 34599487
Alignment:
Q  13 tttatgttatttaattgtaataagtaggttttttaagtcnnnnnnnngtatcacttaggtttttg-tgttaattaattgtaacaag---------aagtt 102  Q
    |||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||  ||||||||||||||||| ||         |||||    
T  34599708 tttaagttatttaattgtaataagtaggttttttaagtctttttttt-tatcacttaggttttttatgttaattaattgtaacgagttggtctttaagtt 34599610  T
Q  103 tttt--cgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34599609 ttttttcgtactaattaggtcatttaagttatttaaccgtaacaatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 34599510  T
Q  201 attaaacaacttaaaggacttaa 223  Q
    |||||||||||||||||||||||    
T  34599509 attaaacaacttaaaggacttaa 34599487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 2143238 - 2143352
Alignment:
Q  98 aagttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagtt 197  Q
    |||||||| |||| |||||||||| |||||||||||||||  ||| |||||  ||| |||||| |||||||| ||||||||||||| || ||| ||||||    
T  2143238 aagtttttccgtactaattaggtcctttaagttatttaac--taacaatttagggg-attttatatcttaaacatgtaagttattcggggcctcaaagtt 2143334  T
Q  198 acaattaaacaacttaaa 215  Q
     |||||||| ||||||||    
T  2143335 tcaattaaataacttaaa 2143352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 29532025 - 29531935
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||| ||||||||||||||||  |  ||||||| ||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||    
T  29532025 tttaagttagttaaccgtaataattta-gaatattttaaatcttaaaaat-taagttattcgggacctaaaaattacaattaaataacttaaa 29531935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 38458681 - 38458758
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaa 201  Q
    |||||||||||||||||||| |||||  || |||||||||||||||||||||||||||| | || | ||||||||||||    
T  38458681 tttaagttatttaaccgtaacaatttgagg-tattttagatcttaaaaatgtaagttatccgggtcttaaaagttacaa 38458758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 37705092 - 37704980
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||||||||  ||||||||| | |||| |||||||| |||| || ||  ||| |||| ||||||||||| || ||||||||| |||||| |||||||||    
T  37705092 ttttttcgtaccaattaggtcctctaagctatttaactgtaacaaattgaggg-atttcagatcttaaaactgcaagttattcgggacct-aaagttaca 37704995  T
Q  201 attaaacaacttaaa 215  Q
    |||||| ||||||||    
T  37704994 attaaataacttaaa 37704980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 13953523 - 13953400
Alignment:
Q  98 aagttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagtt 197  Q
    |||||||| ||||  ||||| ||| |||||||||||||| ||||| |||||  ||| |||| ||| || |||||||||||||||||  |  |||||||||    
T  13953523 aagtttttccgtaccaattacgtcttttaagttatttaatcgtaaaaatttaaggg-atttcagacct-aaaaatgtaagttattcaaggtctaaaagtt 13953426  T
Q  198 acaattaaacaacttaaaggacttaa 223  Q
    ||| ||||| || |||||||||||||    
T  13953425 acagttaaataatttaaaggacttaa 13953400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 41232990 - 41233049
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattc 183  Q
    |||||||||||||||| | | ||||||  || |||||||||||||||||||||||||||||    
T  41232990 tttaagttatttaaccatgacaattttgagg-attttagatcttaaaaatgtaagttattc 41233049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 363615 - 363834
Alignment:
Q  13 tttatgttatttaattgtaataagtaggttttttaagtcnnnnnnnngtatcacttaggtt-tttgtgttaattaattgtaacaag---------aagtt 102  Q
    |||| |||||||||||||||||| |||||| ||||||||        |||||||||||||| ||| ||||||||||||||||||||         |||||    
T  363615 tttaagttatttaattgtaataaataggttctttaagtcttttttt-gtatcacttaggttctttatgttaattaattgtaacaagttggtctttaagtt 363713  T
Q  103 ttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaat 202  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  363714 ttttcgtactaattaggtcatttaagttatttaaccgtaacaatttttgggtattttagatcttaaaaatgtaagttattctgggcctaaaagttacaat 363813  T
Q  203 taaacaacttaaaggacttaa 223  Q
    ||||||||||||| |||||||    
T  363814 taaacaacttaaatgacttaa 363834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 29954874 - 29954976
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaactt 212  Q
    ||||||||| ||||||||||||||||||||||||||  | | |||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  29954874 aattaggtcctttaagttatttaaccgtaataatttg-gagaatttcatatcttaaaaatgtaagttattctgggactaaaagttacaattaaataactt 29954972  T
Q  213 aaag 216  Q
    ||||    
T  29954973 aaag 29954976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 620653 - 620738
Alignment:
Q  129 ttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||||||||||||||  ||| |||| | |||||||||||||||||||||| |    ||||||||||||||||| ||||||||    
T  620653 ttatttaaccgtaataatttagggg-atttaaaatcttaaaaatgtaagttattcggtgtttaaaagttacaattaaataacttaaa 620738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 43816283 - 43816221
Alignment:
Q  155 attttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaagg 217  Q
    |||||||||||||||||||||||||||||  | |||||| |||||||||||| | ||||||||    
T  43816283 attttagatcttaaaaatgtaagttattcaaggcctaaatgttacaattaaatatcttaaagg 43816221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 47600642 - 47600545
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaact 211  Q
    |||| ||||||||||||||||||| ||||| | ||| ||| ||||| |||| ||||||||  |||| |||  || ||||||||||||||||||||||||    
T  47600642 aatttggtcatttaagttatttaatcgtaaaagtttgtgg-tatttcagatgttaaaaattgaagtaatttgggtcctaaaagttacaattaaacaact 47600545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 47726537 - 47726483
Alignment:
Q  162 atcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||    
T  47726537 atcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaag 47726483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 47747843 - 47747789
Alignment:
Q  162 atcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||    
T  47747843 atcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaag 47747789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 802260 - 802197
Alignment:
Q  118 ggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttatt 182  Q
    |||| |||||||||||||||||||| |||||   || ||||||||| ||||||||||||||||||    
T  802260 ggtcctttaagttatttaaccgtaacaatttagcgg-attttagatgttaaaaatgtaagttatt 802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 26706286 - 26706233
Alignment:
Q  163 tcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    ||||| |||| ||||||||||  | ||||||||||||||||||| |||||||||    
T  26706286 tcttacaaatataagttattcgaggcctaaaagttacaattaaataacttaaag 26706233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 46530283 - 46530375
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    |||||||||||||||| ||| || ||||||| |||||||| ||| | ||| || ||||||| ||  ||||||||| |||||||  |||||||||    
T  46530283 tttaagttatttaaccataacaa-ttttggggattttagagctttagaatctatgttattcagggtctaaaagtttcaattaagtaacttaaag 46530375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 20141745 - 20141958
Alignment:
Q  13 tttatgttatttaattgtaataagtaggttttttaagtcnnnnnnnngtatcacttaggtt-tttgtgttaattaattgtaacaag---------aagtt 102  Q
    |||| ||||||||||||||||||||||||| ||||||||        |||||||||||||| ||| ||||||||||||||||||||         |||||    
T  20141745 tttaagttatttaattgtaataagtaggttctttaagtcttttttt-gtatcacttaggttctttatgttaattaattgtaacaagttggtctttaagtt 20141843  T
Q  103 tt-ttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaa 201  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  20141844 ttattcgtactaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattatgggcctaaaaattacaa 20141943  T
Q  202 ttaaacaacttaaag 216  Q
    |||||||||||||||    
T  20141944 ttaaacaacttaaag 20141958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 22519517 - 22519424
Alignment:
Q  125 taagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggac 219  Q
    |||||||||||||||||  |||||  ||| |||| |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  22519517 taagttatttaaccgtagcaatttggggg-atttcagatcttaaaaatgtaagttatttgggacctaaaagttacaattaaataacttaaaggac 22519424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 31095282 - 31095165
Alignment:
Q  98 aagttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagtt 197  Q
    |||||||||| ||  ||| |||||||||||| ||||| ||| ||  ||||||| || |||| ||||||||||||||||||||||||  ||||||||||||    
T  31095282 aagttttttcctaccaataaggtcatttaagctattttaccatatcaatttttagg-atttcagatcttaaaaatgtaagttattcaagacctaaaagtt 31095184  T
Q  198 acaattaaacaacttaaag 216  Q
    ||||||||| |||||||||    
T  31095183 acaattaaataacttaaag 31095165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 51580036 - 51580101
Alignment:
Q  151 gggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    |||||||||||||||||||||| ||||||||||    ||||||||||||||||||| ||| |||||    
T  51580036 gggtattttagatcttaaaaatataagttattcaaagcctaaaagttacaattaaataacgtaaag 51580101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 49291183 - 49291301
Alignment:
Q  103 ttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaat 202  Q
    |||| |||| || |||| |||||||||||||||| ||||| |||||  ||  |||| ||||||| ||||||||||||| || ||   |||||||||||||    
T  49291183 tttttgtatcaagtaggccatttaagttatttaatcgtaacaatttcagga-atttcagatcttcaaaatgtaagttactcgggtt-taaaagttacaat 49291280  T
Q  203 taaacaacttaaaggacttaa 223  Q
    |||| |||||||| |||||||    
T  49291281 taaataacttaaaagacttaa 49291301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 42508292 - 42508343
Alignment:
Q  155 attttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaa 206  Q
    |||| |||||| ||||||||||||||||| || |||||||||||||||||||    
T  42508292 atttcagatctaaaaaatgtaagttattcagggcctaaaagttacaattaaa 42508343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 2803362 - 2803280
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattc 183  Q
    ||||| ||||| |||||  || |||||||||| ||||||||| |  |||  || |||||||||||||||||||||||||||||    
T  2803362 tttttccgtatcaattaaatcctttaagttatctaaccgtaacagatttgtggaattttagatcttaaaaatgtaagttattc 2803280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 34717550 - 34717482
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattc 183  Q
    ||||||||| |||||||||||||||||||| |||||  ||| |||||| || ||||||| |||||||||||    
T  34717550 aattaggtc-tttaagttatttaaccgtaacaatttaaggg-attttaaattttaaaaacgtaagttattc 34717482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 42676839 - 42676798
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaa 142  Q
    ||||||||||| | |||||||||||||||||| |||||||||    
T  42676839 ttttttcgtatcacttaggtcatttaagttatctaaccgtaa 42676798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 3218111 - 3218216
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  3218111 ttttttcgtactaattagatcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctgggcctaaaaattaca 3218210  T
Q  201 attaaa 206  Q
    ||||||    
T  3218211 attaaa 3218216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 48447433 - 48447338
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggac 219  Q
    ||||||||||||||   ||| ||||| ||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||    
T  48447433 tttaagttatttaaagataacaatttgtgg-tattttagatcttaaaaatgtaagttattttgggcataaaagttacaattaaataacttaaaggac 48447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 41331306 - 41331208
Alignment:
Q  117 aggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaag 216  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |||||| |||||||  |||||||||   |||||||||||| ||||||| |||||||||    
T  41331306 aggtcatttaagttatttaaccgtaacaattttgggg-attctagatcctaaaaattgaagttattcgatacctaaaagttataattaaataacttaaag 41331208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 3681252 - 3681346
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaagga 218  Q
    |||||||||||||||||||| |||||||||| |||| | ||||||||||| ||||||||   ||  |||||||||||||||||| | |||||||||    
T  3681252 tttaagttatttaaccgtaacaatttttggg-atttcaaatcttaaaaatttaagttatctagggtctaaaagttacaattaaatagcttaaagga 3681346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 21921047 - 21920966
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattc 183  Q
    ||||| |||| |||||||||| |||||||||||||||| ||| || ||| ||| |||||||| ||||||||||||||||||||    
T  21921047 tttttccgtactaattaggtcctttaagttatttaaccataa-aaatttggggaattttagaccttaaaaatgtaagttattc 21920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 12422262 - 12422323
Alignment:
Q  162 atcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggacttaa 223  Q
    ||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  12422262 atcttaaaagtataagttattcgggacctaaaagttacaattaaataacttaaaggatttaa 12422323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 18128515 - 18128399
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||||||||  |||||| || |||||||||||||||| ||| |||||  | | |||| ||||||||||||||||||||||||  |   |||||||||||    
T  18128515 ttttttcgtacgaattagatcctttaagttatttaaccataacaatttg-gcgaatttcagatcttaaaaatgtaagttattcaaggtttaaaagttaca 18128417  T
Q  201 attaaacaacttaaagga 218  Q
    |||||| || ||||||||    
T  18128416 attaaaaaatttaaagga 18128399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 20389742 - 20389855
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||||||||  |||||| || ||||||||||||||| |||| |||||  | | ||||||||||||||||||||||||||||  || | ||||||||       
T  20389742 ttttttcgtacgaattagatcctttaagttatttaactgtaacaatttg-gcgaattttagatcttaaaaatgtaagttattaagggcttaaaagtt--- 20389837  T
Q  201 attaaacaacttaaagga 218  Q
    |||||| |||||||||||    
T  20389838 attaaaaaacttaaagga 20389855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 32857964 - 32857928
Alignment:
Q  112 taattaggtcatttaagttatttaaccgtaataattt 148  Q
    |||||||||||||||| |||||||||||||| |||||    
T  32857964 taattaggtcatttaaattatttaaccgtaacaattt 32857928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 32548125 - 32548231
Alignment:
Q  112 taattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaact 211  Q
    |||||| |||||||||||||||||||||||| |||||  || ||||||| |||||||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  32548125 taattaagtcatttaagttatttaaccgtaacaatttgcgg-tattttaaatcttaaaaatgtaagctattcgggatctaaaagttacaattaaataact 32548223  T
Q  212 taaaggac 219  Q
    ||||||||    
T  32548224 taaaggac 32548231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 196096 - 196214
Alignment:
Q  98 aagttttttc-gtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagt 196  Q
    |||||||||| |||| ||||||||| ||||||||| |||||||||| |||||  || ||||| | |||||||||||||||||||||| || | |||||||    
T  196096 aagttttttcagtatcaattaggtcctttaagttacttaaccgtaacaatttgagg-tatttcatatcttaaaaatgtaagttattcagggcttaaaagt 196194  T
Q  197 tacaattaaacaacttaaag 216  Q
    |||||||||| |||||||||    
T  196195 tacaattaaataacttaaag 196214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 16419694 - 16419810
Alignment:
Q  98 aagttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagtt 197  Q
    |||||||||||||  |||| | || |||||||||||||||||||| |||||  ||| ||||||||||||| ||||||||||||||  || ||||||||||    
T  16419694 aagttttttcgtaccaatttgatcctttaagttatttaaccgtaacaatttgaggg-attttagatcttagaaatgtaagttatttggggcctaaaagtt 16419792  T
Q  198 acaattaaacaacttaaa 215  Q
     |||||||| ||||||||    
T  16419793 tcaattaaataacttaaa 16419810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 29693281 - 29693388
Alignment:
Q  112 taattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaact 211  Q
    |||||||||  ||||||||||| ||| ||||||||||  | | ||||||||||||||||||||||||||||| || |||||||||||| |||||| || |    
T  29693281 taattaggttctttaagttattgaactgtaataatttaggcg-attttagatcttaaaaatgtaagttattcgggtcctaaaagttacgattaaataatt 29693379  T
Q  212 taaaggact 220  Q
    |||||||||    
T  29693380 taaaggact 29693388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 33547971 - 33547866
Alignment:
Q  112 taattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaact 211  Q
    ||||||||||||||||||||||||| | |||||||||  ||| |||| ||| ||||||||| ||||||||||   || ||||||||||||||||| ||||    
T  33547971 taattaggtcatttaagttatttaaacataataattt--ggggatttcagaccttaaaaatttaagttattcgaaacttaaaagttacaattaaataact 33547874  T
Q  212 taaaggac 219  Q
    ||||||||    
T  33547873 taaaggac 33547866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 28477383 - 28477486
Alignment:
Q  112 taattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaact 211  Q
    |||||||||  ||||||||||| ||| ||||||||||  | | ||||||||||||||||||||||||||||| || ||||||| |||| |||||| || |    
T  28477383 taattaggttctttaagttattgaactgtaataatttaggcg-attttagatcttaaaaatgtaagttattcggggcctaaaaattacgattaaataatt 28477481  T
Q  212 taaag 216  Q
    |||||    
T  28477482 taaag 28477486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 29789823 - 29789938
Alignment:
Q  100 gttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttac 199  Q
    |||||||  ||||||||||||  ||||||||||| ||| ||||||||||  | | |||||||||||||||| |||||||||||| || ||||||| ||||    
T  29789823 gtttttttatattaattaggttctttaagttattgaactgtaataatttaggcg-attttagatcttaaaattgtaagttattcggggcctaaaaattac 29789921  T
Q  200 aattaaacaacttaaag 216  Q
     |||||| || ||||||    
T  29789922 gattaaataatttaaag 29789938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 7202360 - 7202419
Alignment:
Q  155 attttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaa 214  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||    
T  7202360 attttagatcttaaaaatttaagttattcggggcctaaaagttacaattaaataacttaa 7202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 17411254 - 17411156
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggactta 222  Q
    |||||||||||||| |||||||||||  ||| |||| |||||||||||||||||||||||| |   ||||| |||||||||||| |||| ||| ||||||    
T  17411254 tttaagttatttaatcgtaataatttggggg-atttcagatcttaaaaatgtaagttattcggagactaaacgttacaattaaataactcaaaagactta 17411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 10544210 - 10544155
Alignment:
Q  160 agatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||  ||||||||    
T  10544210 agatcttaaaaatgtaaattattcaagacctaaaagttacaattaactaacttaaa 10544155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 29902439 - 29902499
Alignment:
Q  155 attttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||||||||||||||||||||||| |   |||||| ||| ||||||| ||||||||    
T  29902439 attttagatcttaaaaatgtaagttattcggagactaaaaattataattaaataacttaaa 29902499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 12458386 - 12458339
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataattt 148  Q
    ||||| |||| ||||||| ||||||||||||||||||||||| |||||    
T  12458386 tttttccgtactaattagatcatttaagttatttaaccgtaacaattt 12458339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 9405238 - 9405354
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||| ||||| | ||| ||| ||||| |||||||||||||| || |||  || |||| ||||||||||||| | |||||||| | |  || || |||||    
T  9405238 tttttccgtatcacttaagtcctttaatttatttaaccgtaacaa-tttgaggaatttcagatcttaaaaattttagttattcggcatttataaattaca 9405336  T
Q  201 attaaacaacttaaagga 218  Q
    |||||| |||||||||||    
T  9405337 attaaataacttaaagga 9405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 11324166 - 11324219
Alignment:
Q  162 atcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    |||||||||||||||||||||   ||||| ||||||| ||||||| ||||||||    
T  11324166 atcttaaaaatgtaagttatttgagaccttaaagttataattaaaaaacttaaa 11324219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 44291113 - 44291195
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaa 206  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  44291113 tttaagttatttaaccgtaacaattttgggg-attttagatcttaaaaatgtaagttattcgggacctaaaagtttaaattaaa 44291195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 30534545 - 30534636
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||||||||| |||| |||||  |  | |||||||||||||||||||||||||||  || |||| |||||||||||||| || |||||    
T  30534545 tttaagttatttaactgtaacaatttgaga-tgttttagatcttaaaaatgtaagttatttggggcctacaagttacaattaaataatttaaa 30534636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 53509369 - 53509428
Alignment:
Q  155 attttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    |||||| ||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||    
T  53509369 attttaaatcttaaaaatgtaagttatt-tggagctaaaagtttcaattaaataacttaaa 53509428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 51265862 - 51265768
Alignment:
Q  123 tttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaagga 218  Q
    |||||||||||||||||||| |||||  | | |||| ||||||||||||| |||||| |||  | | | ||| ||||||||||| |||||||||||    
T  51265862 tttaagttatttaaccgtaacaatttgagag-atttcagatcttaaaaatttaagtttttcaaggcttgaaatttacaattaaataacttaaagga 51265768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 29756223 - 29756286
Alignment:
Q  117 aggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttatt 182  Q
    ||||| |||||||||||||||||||| ||  | |||| |||| | |||||||||||||||||||||    
T  29756223 aggtcctttaagttatttaaccgtaacaa--tatggggatttcatatcttaaaaatgtaagttatt 29756286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 1662249 - 1662180
Alignment:
Q  154 tattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggacttaa 223  Q
    ||||||||||||||||||| |||||||||   ||  ||||| ||| ||||||| |||||||||| |||||    
T  1662249 tattttagatcttaaaaatataagttatttgagaattaaaaattataattaaataacttaaagggcttaa 1662180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 50898949 - 50898908
Alignment:
Q  174 taagttattctggacctaaaagttacaattaaacaacttaaa 215  Q
    ||||||||||  ||| ||||||||||||||||||||||||||    
T  50898949 taagttattcgagacgtaaaagttacaattaaacaacttaaa 50898908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 8198631 - 8198530
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctgga-cctaaaagttacaattaaacaact 211  Q
    ||||||||| |||||||||||||||||||| || ||| ||| |||| ||||||||||||||||||||| | |||| |||||||||| |||||||| ||||    
T  8198631 aattaggtcctttaagttatttaaccgtaacaa-tttaggggatttcagatcttaaaaatgtaagttagt-tggagcctaaaagtttcaattaaataact 8198534  T
Q  212 taaa 215  Q
    ||||    
T  8198533 taaa 8198530  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 8203391 - 8203290
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctgga-cctaaaagttacaattaaacaact 211  Q
    ||||||||| |||||||||||||||||||| || ||| ||| |||| ||||||||||||||||||||| | |||| |||||||||| |||||||| ||||    
T  8203391 aattaggtcctttaagttatttaaccgtaacaa-tttaggggatttcagatcttaaaaatgtaagttagt-tggagcctaaaagtttcaattaaataact 8203294  T
Q  212 taaa 215  Q
    ||||    
T  8203293 taaa 8203290  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 4558897 - 4558796
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaactt 212  Q
    ||||||||| |||||| |||||||||||||  ||||  || |||||||||||||||||||| |||||||||  | ||||||||||||||||||| || ||    
T  4558897 aattaggtcctttaagctatttaaccgtaactatttgagg-tattttagatcttaaaaatgcaagttattcatggcctaaaagttacaattaaataaatt 4558799  T
Q  213 aaa 215  Q
    |||    
T  4558798 aaa 4558796  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 13323860 - 13323747
Alignment:
Q  101 ttttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttaca 200  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||  ||| |||| | ||| |||||| | |||    
T  13323860 tttttccgtatcaattaggtcatttaagttatttaatcgtaataa-tttggagaattttaaatcttaaaaaaataaattatccgggatctaaaaatcaca 13323762  T
Q  201 attaaacaacttaaa 215  Q
    |||||| ||||||||    
T  13323761 attaaataacttaaa 13323747  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 42054196 - 42054120
Alignment:
Q  102 tttttcgtattaattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagtt 179  Q
    |||||||||| ||||| ||| |||||||||||||||||| | || ||| ||  |||| | ||||||||||||||||||    
T  42054196 tttttcgtatcaattaagtcctttaagttatttaaccgtgacaa-tttaggagatttcaaatcttaaaaatgtaagtt 42054120  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 27533182 - 27533114
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataatttttgggtattttagatcttaaaaatgtaagttattc 183  Q
    ||||||||||||||||||||||||| |||||||||| |    |||| | ||||||||||||||||||||||    
T  27533182 aattaggtcatttaagttatttaactgtaataatttgtaa--atttcatatcttaaaaatgtaagttattc 27533114  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 37064675 - 37064640
Alignment:
Q  113 aattaggtcatttaagttatttaaccgtaataattt 148  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37064675 aattatgtcatttaagttatttaaccgtaataattt 37064640  T

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