View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_low_11 (Length: 217)
Name: NF10437_low_11
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 4926219 - 4926036
Alignment:
| Q |
17 |
aggcataaattacatatcagatgctgaattcatcaatataggtgtaagcaagagtatatcacccacagagaagattactcatcaacaacaactacatttt |
116 |
Q |
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||||||||| |||||||||||||| |||||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
4926219 |
aggcataaactacatatcagatgcagaattcatagatacaggtgtaagtaagagtatatcacctgcagagatgattactcatcaacaacaactacatttt |
4926120 |
T |
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| Q |
117 |
gtacggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagctactttc |
200 |
Q |
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| T |
4926119 |
gtacggagctttccaagtggagttagaaactgttacagaataaatgtaaacatgggtgttcaatatttaatcagagctactttc |
4926036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 4876324 - 4876142
Alignment:
| Q |
19 |
gcataaattacatatcagatgctgaattcatcaatataggtgtaagcaagagtatatcacccacagagaagattactcatcaacaacaactacattttgt |
118 |
Q |
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||||||||||||| ||||||||||||||||| | | ||||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||| |
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| T |
4876324 |
gcataaattacatttcagatgctgaattcataagaacaggtgtaagaatgagtatagcacctgcagagaagattactcatcaacagcaactacattttgt |
4876225 |
T |
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| Q |
119 |
acggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagctactttct |
201 |
Q |
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| T |
4876224 |
aaggagctttccaagtggagtgagaaattgctacagaataaatgtaaacatggatattcaatatttaatcagagctactttct |
4876142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 4735970 - 4736048
Alignment:
| Q |
121 |
ggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctacttt |
199 |
Q |
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| T |
4735970 |
ggagctttccaagtggagtgagaaattgttacaaaataaatgta-acaagtggtactaaatatttaatcagagctacttt |
4736048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 21440443 - 21440363
Alignment:
| Q |
121 |
ggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttct |
201 |
Q |
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| T |
21440443 |
ggagctttccaagtggagtgagaaactgttacaaaataaatgta-acaagtggtactaaatatttaataagagcttctttct |
21440363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 4891333 - 4891199
Alignment:
| Q |
17 |
aggcataaattacatatcagatgctgaattcatcaatataggtgtaagcaagagtatatcacccacagagaagattactcatcaacaacaactacatttt |
116 |
Q |
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|||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||| ||| ||||| ||| || ||| ||| |||||| | | | |
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| T |
4891333 |
aggcataaattacatatcagatgccaaattcatagatactggtgtaagcaagaggatagcacgtacagataagttttctct---acagcaactagaatat |
4891237 |
T |
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| Q |
117 |
gtacggagctttccaagtggagtgagaaactgttacaa |
154 |
Q |
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|| | |||||||||||||||||||||||||||||||| |
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| T |
4891236 |
gtgagaagctttccaagtggagtgagaaactgttacaa |
4891199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 4714066 - 4714146
Alignment:
| Q |
121 |
ggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttct |
201 |
Q |
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| T |
4714066 |
ggagctttccaagtggagtgagaaattgttacagaataaatgta-acaagtggtattaaatatttaatcagatcttctttct |
4714146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 4725500 - 4725578
Alignment:
| Q |
123 |
agctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttct |
201 |
Q |
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| T |
4725500 |
agctttccaagtggagtgagaaattgttacaaaataaatata-acaagtggtactaaatatttaatcagagcttctttct |
4725578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 4777429 - 4777351
Alignment:
| Q |
123 |
agctttccaagtggagtgagaaactgttacaaagtaaatgtacacat-gggtattcaatatttaatcagagctactttct |
201 |
Q |
| |
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| T |
4777429 |
agctttccaagtggagtgagaaattgttacagaataaatgta-acatctggtactaaatatttaatcagagcttctttct |
4777351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 10445981 - 10446061
Alignment:
| Q |
121 |
ggagctttccaagtggagtgagaaactgttacaaagtaaatg-tacacatgggtattcaatatttaatcagagctactttct |
201 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| | |||||| |||| | |||||||||||||||||||||| | |||||| |
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| T |
10445981 |
ggagctttcctagtggagtgagaaattgttacagaataaatgttaca-agtggtattcaatatttaatcagagtttctttct |
10446061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 4995506 - 4995599
Alignment:
| Q |
100 |
aacaacaactacattttgtacggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagc |
193 |
Q |
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|||| |||||||| | ||| |||||||||||| |||| ||||||||||||||| | |||||||| | |||| | |||||||||||||||| |
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| T |
4995506 |
aacagcaactacaatatgtgaggagctttccaattggaatgagaaactgttacagaataaatgtagcaagtggtactaaatatttaatcagagc |
4995599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 4680600 - 4680680
Alignment:
| Q |
121 |
ggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagctactttct |
201 |
Q |
| |
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|||||||||| |||||||||| ||| ||||||||| || ||||| || |||| ||||||||||||||||| |||||| |
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| T |
4680600 |
ggagctttcccagtggagtgaaaaattgttacaaaatagatgtaaccaatggtaccaaatatttaatcagagcttctttct |
4680680 |
T |
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