View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_low_6 (Length: 301)
Name: NF10437_low_6
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 43699184 - 43699458
Alignment:
| Q |
18 |
catccaagagatatgaagcagtgaacgggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccagg |
117 |
Q |
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| T |
43699184 |
catccaagagatatgaagcagtgaacgggagtgcttggtccgagttgcgaataactttaacaccaggccaattcactctaccatcagtgttagatccagg |
43699283 |
T |
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| Q |
118 |
tccaacattctcaaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgc |
217 |
Q |
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| T |
43699284 |
tccaacattctcaaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgc |
43699383 |
T |
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| Q |
218 |
aatatagccactgtggaatatgccctccaaggacgacccaatgttccacgcacctctgattttctgccttcatct |
292 |
Q |
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| T |
43699384 |
aatatagccactgtggaatatgccctccaaggacgacccaatgttccacgcacctctgattttttgccttcatct |
43699458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 45513986 - 45514250
Alignment:
| Q |
18 |
catccaagagatatgaagcagtgaacgggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccagg |
117 |
Q |
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||||||||||||| ||||||||||| |||||||||| || | |||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
45513986 |
catccaagagataggaagcagtgaaagggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgatccagg |
45514085 |
T |
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| Q |
118 |
tccaacattctcaaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgc |
217 |
Q |
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| T |
45514086 |
tccaacattctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctcttggatcaaccattgaatctatgaaacaatgc |
45514185 |
T |
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| Q |
218 |
aatatagccactgtggaatatgccctccaaggacgacccaatgttccacgcacctctgattttct |
282 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |||||| || |||||||||| ||||| |
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| T |
45514186 |
aatatagcaactgttgaatatgccctccaaggacgacctaatgttgcatgcacctctgactttct |
45514250 |
T |
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