View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10437_low_9 (Length: 230)

Name: NF10437_low_9
Description: NF10437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10437_low_9
NF10437_low_9
[»] chr1 (6 HSPs)
chr1 (1-224)||(363823-364048)
chr1 (17-67)||(620751-620801)
chr1 (14-63)||(47600482-47600531)
chr1 (21-65)||(16554303-16554347)
chr1 (21-64)||(25112699-25112742)
chr1 (24-64)||(47624322-47624362)
[»] chr7 (7 HSPs)
chr7 (15-223)||(3218217-3218427)
chr7 (20-89)||(12422024-12422092)
chr7 (1-63)||(48447283-48447345)
chr7 (27-64)||(12264738-12264775)
chr7 (21-65)||(30551996-30552040)
chr7 (17-64)||(41331373-41331420)
chr7 (16-64)||(23822251-23822299)
[»] chr5 (6 HSPs)
chr5 (1-224)||(34599273-34599498)
chr5 (20-67)||(38458796-38458843)
chr5 (17-90)||(30384188-30384259)
chr5 (17-64)||(29531876-29531922)
chr5 (17-65)||(38458853-38458899)
chr5 (39-67)||(10415468-10415496)
[»] chr4 (8 HSPs)
chr4 (6-224)||(20141958-20142179)
chr4 (21-67)||(49291310-49291356)
chr4 (17-65)||(34717614-34717660)
chr4 (20-64)||(53769817-53769861)
chr4 (123-187)||(49498328-49498394)
chr4 (35-64)||(31095348-31095377)
chr4 (27-64)||(33617954-33617991)
chr4 (16-64)||(34717389-34717437)
[»] chr6 (4 HSPs)
chr6 (84-224)||(32557467-32557604)
chr6 (16-63)||(7533533-7533580)
chr6 (40-89)||(7004419-7004467)
chr6 (15-64)||(17411103-17411152)
[»] chr2 (3 HSPs)
chr2 (21-84)||(3289488-3289550)
chr2 (17-68)||(4558693-4558743)
chr2 (39-67)||(13323936-13323964)
[»] chr8 (4 HSPs)
chr8 (27-64)||(114746-114783)
chr8 (22-90)||(27532966-27533032)
chr8 (17-61)||(3806856-3806900)
chr8 (39-87)||(12807704-12807751)
[»] chr3 (2 HSPs)
chr3 (21-90)||(9343207-9343275)
chr3 (21-86)||(9357881-9357946)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 363823 - 364048
Alignment:
Q  1 taaaggacttaaccattacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaattattattat 100  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  363823 taaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaatttagcctaattattattat 363922  T
Q  101 taagtaaagttagaaagcttttacctatttcaagagtttaata--gattaaagacatgttttggattgagaatttctcgatttttagccccgtaaatatc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||    
T  363923 taagtaaagttagaaagcttttacctatttcaagagtttaatagtgattaaagacatgttttggattgggaatttctcggtttttagccccgtcaatgtc 364022  T
Q  199 tttgaaaggagatgaatgtaaatctt 224  Q
     |||||||||||||||||||||||||    
T  364023 cttgaaaggagatgaatgtaaatctt 364048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 620751 - 620801
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaaga 67  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  620751 tacgaaaaatacttaaaggacaaagttattacaattaaataacttaaaaga 620801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 47600531 - 47600482
Alignment:
Q  14 cattacgaaaaatacttaaatgacaaatttattacaattaaataacttaa 63  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  47600531 cattacgaaaaatacttaaatgactaatttgttacaattaaatagcttaa 47600482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 16554347 - 16554303
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaa 65  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  16554347 aaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 25112699 - 25112742
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||    
T  25112699 aaaaataattaaaagactaatttattacaattaaataacttaaa 25112742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 47624362 - 47624322
Alignment:
Q  24 aatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    |||| ||||||||| |||||||||||||||||||| |||||    
T  47624362 aatatttaaatgactaatttattacaattaaataatttaaa 47624322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 3218217 - 3218427
Alignment:
Q  15 attacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaattattattattaagtaaagttaga 114  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3218217 attacgaaaaatatttaaatgacaactttattacaattaaataacttaaaagaacatctggtgtaatttagcctaattattattattaagtaaagttaga 3218316  T
Q  115 aagcttttacctatttcaagagtttaata--gattaaagacatgttttggattgagaatttctcgatttttagccccgtaaatatctttgaaaggagatg 212  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||| ||| ||||||||||||| ||| || |||||| ||||||    
T  3218317 aagcttttacctatttcaagagtttaatagtgattagagacatgttttggattgggaatttttcggtttttagccccgtcaatgtccttgaaaagagatg 3218416  T
Q  213 aatgtaaatct 223  Q
    |||||||||||    
T  3218417 aatgtaaatct 3218427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 12422092 - 12422024
Alignment:
Q  20 gaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagccta 89  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||| || |||| |||| |||||||||    
T  12422092 gaaaaaaacttaaatgaccaatttattacaatttaataacttaaaag-acctcggatgtagtttagccta 12422024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48447345 - 48447283
Alignment:
Q  1 taaaggacttaaccattacgaaaaatacttaaatgacaaatttattacaattaaataacttaa 63  Q
    |||||||| ||| | ||||||||||||||||||  || ||||| |||||||||||||||||||    
T  48447345 taaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 12264775 - 12264738
Alignment:
Q  27 acttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  12264775 acttaaatgaccaatttattacaattaaataacttaaa 12264738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 30551996 - 30552040
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaa 65  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  30551996 aaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 41331373 - 41331420
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||| ||| ||||||||||  ||||||||||||||||||||||||||    
T  41331373 tacgagaaaaacttaaatgatcaatttattacaattaaataacttaaa 41331420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 23822299 - 23822251
Alignment:
Q  16 ttacgaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    |||||||||||| |||||  || ||||| ||||||||||||||||||||    
T  23822299 ttacgaaaaatatttaaagaactaatttgttacaattaaataacttaaa 23822251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34599498 - 34599273
Alignment:
Q  1 taaaggacttaaccattacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaattattattat 100  Q
    |||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34599498 taaaggacttaagcattaagaaaaatacttaaataactaatttattacaattaaataacttaaaagaacatctggtgtaatttagcttaattattattat 34599399  T
Q  101 taagtaaagttagaaagcttttacctatttcaagagtttaat--agattaaagacatgttttggattgagaatttctcgatttttagccccgtaaatatc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||| |  |||||||||||| ||| |     
T  34599398 taagtaaagttagaaagcttttacctatttcaagagtttaatggtgattaaagacatgttttggattgggaatttcttggattttagccccgtcaatgtt 34599299  T
Q  199 tttgaaaggagatgaatgtaaatctt 224  Q
     |||||||||||||||||||||||||    
T  34599298 cttgaaaggagatgaatgtaaatctt 34599273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 38458796 - 38458843
Alignment:
Q  20 gaaaaatacttaaatgacaaatttattacaattaaataacttaaaaga 67  Q
    |||||||||||||||||| || |||||||||| |||||||||||||||    
T  38458796 gaaaaatacttaaatgactaacttattacaataaaataacttaaaaga 38458843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 30384259 - 30384188
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaa 90  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||  || | |||||||||||||||    
T  30384259 tacgaaaaa-acttaaaagacaaatttgttacaattaaataactt-aaagaatctccgatgtaatttagcctaa 30384188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 29531922 - 29531876
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  29531922 tacgaaaaa-acttaaaggactaatttattacaattaaataacttaaa 29531876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 38458853 - 38458899
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaa 65  Q
    ||||||||| |||||||  || |||||||||||||||||||||||||||    
T  38458853 tacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 10415468 - 10415496
Alignment:
Q  39 aatttattacaattaaataacttaaaaga 67  Q
    |||||||||||||||||||||||||||||    
T  10415468 aatttattacaattaaataacttaaaaga 10415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 20141958 - 20142179
Alignment:
Q  6 gacttaaccattacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaattattattattaagt 105  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  20141958 gacttaagcattacgaaaaatacttaaatgaaaattttattacaattaaataacttaaaagaacatctcgtgtaatttagcctaattattattattaagt 20142057  T
Q  106 aaagttagaaagcttttacctatttcaagagtttaata--gattaaagacatgttttggattgagaatttctcgatttttag-ccccgtaaatatctttg 202  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||  ||||||||| ||||||| |||||| ||| || |||    
T  20142058 aaagttagaaagcttttatctatttcaagagtttaatagtgattaaagacatgttttggattggaaatttctcggtttttagcccccgtcaatgtccttg 20142157  T
Q  203 aaaggagatgaatgtaaatctt 224  Q
    ||||||||||||||||||||||    
T  20142158 aaaggagatgaatgtaaatctt 20142179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 49291310 - 49291356
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaaga 67  Q
    ||||||||||||||||| || || |||||||||||||||||||||||    
T  49291310 aaaaatacttaaatgactaacttgttacaattaaataacttaaaaga 49291356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 34717614 - 34717660
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaa 65  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  34717614 tacgaaaaa-acttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 53769817 - 53769861
Alignment:
Q  20 gaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    |||||||||||||||||  |||||||||||||||||||| |||||    
T  53769817 gaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 49498394 - 49498328
Alignment:
Q  123 acctatttcaagagtttaatag--attaaagacatgttttggattgagaatttctcgatttttagcc 187  Q
    |||||||||||||||| |||||  || ||||| |||||||| |||| ||| ||||||||||||||||    
T  49498394 acctatttcaagagttaaatagtgataaaagatatgttttgaattgggaagttctcgatttttagcc 49498328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 31095348 - 31095377
Alignment:
Q  35 gacaaatttattacaattaaataacttaaa 64  Q
    ||||||||||||||||||||||||||||||    
T  31095348 gacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 33617954 - 33617991
Alignment:
Q  27 acttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  33617954 acttaaaggaccaatttattacaattaaataacttaaa 33617991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34717437 - 34717389
Alignment:
Q  16 ttacgaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    |||||||||||||||||||||  || || |||| |||||||||||||||    
T  34717437 ttacgaaaaatacttaaatgattaacttgttaccattaaataacttaaa 34717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 32557467 - 32557604
Alignment:
Q  84 agcctaattattattattaagtaaagttagaaagcttttacctatttcaagagtttaata--gattaaagacatgttttggattgagaatttctcgattt 181  Q
    ||||||||| |||||||||||| |||||||||     | ||||||||||||||||| |||  ||| ||||||||| ||||||||| ||| |||| | |||    
T  32557467 agcctaattgttattattaagtgaagttagaa-----tcacctatttcaagagtttgatagtgataaaagacatgctttggattgggaagttcttggttt 32557561  T
Q  182 ttagccccgtaaatatctttgaaaggagatgaatgtaaatctt 224  Q
    ||| ||  || ||| | |||||||| ||||| | |||||||||    
T  32557562 ttaaccttgtcaatgtttttgaaagaagatgcaagtaaatctt 32557604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 7533580 - 7533533
Alignment:
Q  16 ttacgaaaaatacttaaatgacaaatttattacaattaaataacttaa 63  Q
    |||||||||||| ||||||||| ||||| ||| |||||||||||||||    
T  7533580 ttacgaaaaatatttaaatgactaatttcttataattaaataacttaa 7533533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 7004419 - 7004467
Alignment:
Q  40 atttattacaattaaataacttaaaagaacatcgggtgtaatttagccta 89  Q
    |||||||||||||||||||||| ||||||| || ||||||||||| ||||    
T  7004419 atttattacaattaaataactt-aaagaacttctggtgtaatttaaccta 7004467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 17411152 - 17411103
Alignment:
Q  15 attacgaaaaatacttaaatgacaaatttattacaattaaataacttaaa 64  Q
    ||||||||||||| ||||| ||| || || ||||||||||||||||||||    
T  17411152 attacgaaaaatatttaaaagactaacttgttacaattaaataacttaaa 17411103  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 3289488 - 3289550
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaattta 84  Q
    ||||| ||||||| ||| |||||||||||||||||||| || |||||||| | |||||||||||    
T  3289488 aaaaaaacttaaaagaccaatttattacaattaaataa-tttaaagaacagctggtgtaattta 3289550  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 4558743 - 4558693
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataacttaaaagaa 68  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  4558743 tacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaa 4558693  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 13323936 - 13323964
Alignment:
Q  39 aatttattacaattaaataacttaaaaga 67  Q
    |||||||||||||||||||||||||||||    
T  13323936 aatttattacaattaaataacttaaaaga 13323964  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 114746 - 114783
Alignment:
Q  27 acttaaatgacaaatttattacaattaaataacttaaa 64  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  114746 acttaaatgacaaacttattacaattaattaacttaaa 114783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 27533032 - 27532966
Alignment:
Q  22 aaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaa 90  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||  ||| || ||| |||||||||||||    
T  27533032 aaaaaacttaaaagatcaatttattacaattaaataacttaaa--aacgtccggtataatttagcctaa 27532966  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 3806900 - 3806856
Alignment:
Q  17 tacgaaaaatacttaaatgacaaatttattacaattaaataactt 61  Q
    ||||||||||||||||||||| || || ||||| |||||||||||    
T  3806900 tacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 12807704 - 12807751
Alignment:
Q  39 aatttattacaattaaataacttaaaagaacatcgggtgtaatttagcc 87  Q
    ||||||| ||||||||||||||||||||| | || ||||||||||||||    
T  12807704 aatttataacaattaaataacttaaaagatc-tctggtgtaatttagcc 12807751  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 9343207 - 9343275
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagcctaa 90  Q
    ||||||||||||| ||| || |||||| ||||||||||||| ||||||  || | |||||||||||||||    
T  9343207 aaaaatacttaaaggaccaacttattataattaaataactt-aaagaatctccgatgtaatttagcctaa 9343275  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 9357881 - 9357946
Alignment:
Q  21 aaaaatacttaaatgacaaatttattacaattaaataacttaaaagaacatcgggtgtaatttagc 86  Q
    ||||||||||||| ||| || |||||| |||||||||||||||||| |  || | |||||||||||    
T  9357881 aaaaatacttaaaggaccaacttattataattaaataacttaaaaggatctccgatgtaatttagc 9357946  T

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