View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_high_3 (Length: 305)

Name: NF10438_high_3
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_high_3
NF10438_high_3
[»] chr2 (10 HSPs)
chr2 (190-285)||(14436380-14436475)
chr2 (18-87)||(30927845-30927913)
chr2 (92-141)||(1238156-1238205)
chr2 (97-141)||(9459075-9459119)
chr2 (91-138)||(2661069-2661116)
chr2 (95-141)||(27934875-27934921)
chr2 (91-137)||(44496722-44496768)
chr2 (88-137)||(7640648-7640697)
chr2 (96-137)||(40967393-40967434)
chr2 (97-137)||(37320539-37320579)
[»] chr3 (9 HSPs)
chr3 (190-275)||(2333077-2333162)
chr3 (90-137)||(14017212-14017259)
chr3 (92-137)||(5117202-5117247)
chr3 (90-137)||(7824799-7824846)
chr3 (96-141)||(11574251-11574296)
chr3 (89-134)||(43011313-43011358)
chr3 (96-141)||(47377367-47377412)
chr3 (97-137)||(22462311-22462351)
chr3 (97-141)||(28595788-28595832)
[»] chr7 (14 HSPs)
chr7 (93-137)||(45979108-45979152)
chr7 (90-138)||(22062434-22062482)
chr7 (90-137)||(429200-429247)
chr7 (90-137)||(32315215-32315262)
chr7 (98-137)||(47960896-47960935)
chr7 (95-141)||(5352326-5352372)
chr7 (92-137)||(3948048-3948093)
chr7 (96-133)||(29347008-29347045)
chr7 (97-138)||(41860279-41860320)
chr7 (97-141)||(24071453-24071497)
chr7 (93-137)||(28012636-28012680)
chr7 (97-137)||(35165532-35165572)
chr7 (91-131)||(35839163-35839203)
chr7 (97-137)||(38911298-38911338)
[»] chr4 (14 HSPs)
chr4 (97-137)||(19124644-19124684)
chr4 (95-141)||(39678563-39678609)
chr4 (97-137)||(7371570-7371610)
chr4 (97-141)||(18635529-18635573)
chr4 (95-138)||(14136088-14136131)
chr4 (98-137)||(40847089-40847128)
chr4 (95-141)||(11949681-11949727)
chr4 (95-137)||(12712040-12712082)
chr4 (92-138)||(17134119-17134165)
chr4 (96-137)||(41536920-41536961)
chr4 (93-137)||(6459946-6459990)
chr4 (90-138)||(11314710-11314758)
chr4 (97-137)||(29910460-29910500)
chr4 (97-141)||(48495033-48495077)
[»] chr5 (10 HSPs)
chr5 (90-137)||(8545011-8545058)
chr5 (91-137)||(23118073-23118119)
chr5 (99-137)||(31159430-31159468)
chr5 (103-141)||(32460016-32460054)
chr5 (97-137)||(35109399-35109439)
chr5 (94-137)||(12285624-12285667)
chr5 (98-137)||(19783657-19783696)
chr5 (92-138)||(10045326-10045372)
chr5 (97-137)||(17338725-17338765)
chr5 (97-137)||(35610014-35610054)
[»] chr8 (7 HSPs)
chr8 (95-137)||(17062361-17062403)
chr8 (95-137)||(17585955-17585997)
chr8 (89-138)||(36948182-36948231)
chr8 (90-137)||(1877684-1877731)
chr8 (95-142)||(35061633-35061680)
chr8 (98-141)||(40512648-40512691)
chr8 (89-137)||(29293168-29293216)
[»] chr6 (6 HSPs)
chr6 (95-137)||(7081676-7081718)
chr6 (97-137)||(6470638-6470678)
chr6 (95-137)||(8810637-8810679)
chr6 (95-141)||(14552334-14552380)
chr6 (97-137)||(4450261-4450301)
chr6 (97-137)||(19581446-19581486)
[»] chr1 (4 HSPs)
chr1 (97-141)||(47835733-47835777)
chr1 (92-137)||(563195-563240)
chr1 (92-137)||(50849095-50849140)
chr1 (86-142)||(41998339-41998395)
[»] scaffold0896 (1 HSPs)
scaffold0896 (95-137)||(3138-3180)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 14436475 - 14436380
Alignment:
Q  190 ggctatgctatttgatttacttgacaggttaccggaacagcaaacgctaacaactgccatgactctttggagtttgtggaagagccagaatctgaa 285  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  14436475 ggctatgctatttgatttacttgacaggttaacagaacatcaaaggctaacaactgccatgactctttggagtttgtggaagagccgcaatctgaa 14436380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30927845 - 30927913
Alignment:
Q  18 cataaaaatgacatgatctttataagaggtagaaattgttgacatgctcattctctttagaatgcattta 87  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||    
T  30927845 cataaaaatgacctgatctt-ataagaggtagatattgttgacatgctcattgtctttagaatgcattta 30927913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 1238156 - 1238205
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  1238156 gttctcgtgagcttaactcaattgatagggacaatgcataatatatacaa 1238205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 9459119 - 9459075
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||    
T  9459119 cgtgagcttagctcagttgataaagacaatgcataatatatacaa 9459075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 2661116 - 2661069
Alignment:
Q  91 tgttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    ||||||||||||||||||||| ||| ||| |||||| |||||||||||    
T  2661116 tgttctcgtgagcttaactcagttggtaaggacaatgcataatatata 2661069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 27934921 - 27934875
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||| |||| ||| ||| |||||||||||||||||||||    
T  27934921 ctcgtgagcttagctcagttggtaaggacaatacataatatatacaa 27934875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 44496768 - 44496722
Alignment:
Q  91 tgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||||| |||| ||| ||| |||||||||||||||||    
T  44496768 tgttctcgtgagcttagctcagttggtaaggacaatacataatatat 44496722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 7640648 - 7640697
Alignment:
Q  88 agttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||| | ||||||||||||||| ||| ||| |||||||||||||||||    
T  7640648 agttgtccccgtgagcttaactcaattggtaaggacaatacataatatat 7640697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 40967434 - 40967393
Alignment:
Q  96 tcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||||| ||||||| |||||| ||||||||||    
T  40967434 tcgtgagcttaactcagttgataaggacaatgcataatatat 40967393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 37320579 - 37320539
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  37320579 cgtgagcttaactcagttggtaaagacaatgcataatatat 37320539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 2333077 - 2333162
Alignment:
Q  190 ggctatgctatttgatttacttgacaggttaccggaacagcaaacgctaacaactgccatgactctttggagtttgtggaagagcc 275  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||    
T  2333077 ggctatgttatttgatttacttgacaggttaccggaacaacaaaggctaacaactgtcatgactctctggagtttgtggaagagcc 2333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 14017212 - 14017259
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||    
T  14017212 ttgttctcgtgagcttatctctattgataaagacaatacataatatat 14017259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 5117202 - 5117247
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||    
T  5117202 gttctcgtgagcttagctcagttgataaggacaatacataatatat 5117247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 7824799 - 7824846
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||||    
T  7824799 ttgtcctcgtgagtttaactcagttgatatagacaatacataatatat 7824846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 11574251 - 11574296
Alignment:
Q  96 tcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||||||| ||||||| || ||| ||||||||||||||    
T  11574251 tcgtgagcttaactcagttgataaggataatgcataatatatacaa 11574296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 43011313 - 43011358
Alignment:
Q  89 gttgttctcgtgagcttaactcatttgataaagacaatacataata 134  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  43011313 gttgtcctcgtgagcctaactcagttgatatagacaatacataata 43011358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 47377412 - 47377367
Alignment:
Q  96 tcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||||||| ||| ||| |||||| ||||||||||||||    
T  47377412 tcgtgagcttaactcagttggtaaggacaatgcataatatatacaa 47377367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 22462311 - 22462351
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  22462311 cgtgagcttaactcagttgataaggacaatgcataatatat 22462351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 28595788 - 28595832
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    ||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  28595788 cgtgaacttaactcaattggtaaagacaatgcataatatatacaa 28595832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 45979108 - 45979152
Alignment:
Q  93 ttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  45979108 ttctcgtgggcttaactcatttgataaagacaatacataatatat 45979152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 22062482 - 22062434
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||    
T  22062482 ttgtcctcgtgagcttaactcaattggtaaggacaatacataatatata 22062434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 429247 - 429200
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||||||||||| ||||||  || ||||||||||||||    
T  429247 ttgttctcgtgagcttaactcagttgatatggataatacataatatat 429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 32315215 - 32315262
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||| ||||||||||||||| ||||||| |||| ||||||||||||    
T  32315215 ttgttcacgtgagcttaactcagttgataaggacattacataatatat 32315262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 47960896 - 47960935
Alignment:
Q  98 gtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  47960896 gtgagcttaactcaattgataaggacaatacataatatat 47960935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 5352326 - 5352372
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||| |||| ||| ||| |||||||||||||||||||||    
T  5352326 ctcgtgagcttagctcagttggtaaggacaatacataatatatacaa 5352372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3948048 - 3948093
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||| |||||||| |||||| ||||||| ||||||||||    
T  3948048 gttctcgtgagtttaactcagttgatagagacaatgcataatatat 3948093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 29347045 - 29347008
Alignment:
Q  96 tcgtgagcttaactcatttgataaagacaatacataat 133  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  29347045 tcgtgagcttaactcaattgataaggacaatacataat 29347008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 41860320 - 41860279
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    ||||||||||||| | |||||||||||||| |||||||||||    
T  41860320 cgtgagcttaacttaattgataaagacaatgcataatatata 41860279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 24071453 - 24071497
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    ||||||||||||||| |||||||||| ||  ||||||||||||||    
T  24071453 cgtgagcttaactcaattgataaagataacgcataatatatacaa 24071497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 28012680 - 28012636
Alignment:
Q  93 ttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  28012680 ttctcgtgagcttaactcagttggtaaggacaatgcataatatat 28012636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 35165532 - 35165572
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  35165532 cgtgagtttaactcagttgataacgacaatacataatatat 35165572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 35839203 - 35839163
Alignment:
Q  91 tgttctcgtgagcttaactcatttgataaagacaatacata 131  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  35839203 tgttctcgtgagcttaactcagttgatatagacaatgcata 35839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 38911298 - 38911338
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  38911298 cgtgagcttaactcagttgataaagacaatgtataatatat 38911338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 19124684 - 19124644
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  19124684 cgtgagcttaactcagttgataaagacaatacataatatat 19124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 39678609 - 39678563
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||    
T  39678609 ctcgtgagctaagctcagttgataaagacaatacataatatatacaa 39678563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 7371610 - 7371570
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  7371610 cgtgagcttaactcagttgataaggacaatacataatatat 7371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 18635529 - 18635573
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||    
T  18635529 cgtgagcttaactcagttgataaggacaatgcataatatatacaa 18635573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 14136088 - 14136131
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    |||||||||||| |||| |||||||||||||| |||||||||||    
T  14136088 ctcgtgagcttagctcagttgataaagacaatgcataatatata 14136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 40847128 - 40847089
Alignment:
Q  98 gtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  40847128 gtgagcttaactcagttgatagagacaatacataatatat 40847089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 11949727 - 11949681
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||| |||| |||||||  ||||||||||||||||||||    
T  11949727 ctcgtgagcttagctcagttgataagaacaatacataatatatacaa 11949681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 12712082 - 12712040
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||    
T  12712082 ctcgtgaacttaactcatttgatagagacaatgcataatatat 12712040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 17134119 - 17134165
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    |||||||||||||||||||| ||| || ||||||| |||||||||||    
T  17134119 gttctcgtgagcttaactcaattggtagagacaatgcataatatata 17134165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 41536920 - 41536961
Alignment:
Q  96 tcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||| |||||||| ||||||| |||||||||||||||||    
T  41536920 tcgtgagtttaactcaattgataaggacaatacataatatat 41536961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 6459990 - 6459946
Alignment:
Q  93 ttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||||| ||||||  |||||| ||||||||||    
T  6459990 ttctcgtgagcttaactcagttgatatggacaatgcataatatat 6459946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 11314758 - 11314710
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    |||| ||||| ||||||||||| ||||||||||||||  ||||||||||    
T  11314758 ttgtcctcgtaagcttaactcagttgataaagacaatgtataatatata 11314710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 29910460 - 29910500
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  29910460 cgtgagcttaactcaattgataaggacaatgcataatatat 29910500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 48495077 - 48495033
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||    
T  48495077 cgtgagcttatctcaattgctaaagacaatacatgatatatacaa 48495033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 8545058 - 8545011
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  8545058 ttgttctcgtgagcttaactcagttgataaggacaatgcataatatat 8545011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 23118119 - 23118073
Alignment:
Q  91 tgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  23118119 tgttctcgtgagcttaactcagttgataaggacaatgcataatatat 23118073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 31159430 - 31159468
Alignment:
Q  99 tgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  31159430 tgagcttaactcagttgataaagacaatacataatatat 31159468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 32460016 - 32460054
Alignment:
Q  103 cttaactcatttgataaagacaatacataatatatacaa 141  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  32460016 cttaactcagttgataaagacaatacataatatatacaa 32460054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 35109399 - 35109439
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  35109399 cgtgagcttaactcagttggtaaagacaatacataatatat 35109439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 12285667 - 12285624
Alignment:
Q  94 tctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||    
T  12285667 tctcgtgaacttaactcagttgataaagacaatatataatatat 12285624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 19783696 - 19783657
Alignment:
Q  98 gtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  19783696 gtgagcttaacttagttgataaagacaatacataatatat 19783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 10045326 - 10045372
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    ||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  10045326 gttctcgagagcttaactcagttggtaaagataatacataatatata 10045372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 17338765 - 17338725
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  17338765 cgtgagcttagctcaattggtaaagacaatacataatatat 17338725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 35610054 - 35610014
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||| |||||||| |||||| ||||||||||||||||||    
T  35610054 cgtgagtttaactcaattgatatagacaatacataatatat 35610014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 17062403 - 17062361
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  17062403 ctcgtgagcttaactcagttgatatagacaatacataatatat 17062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 17585955 - 17585997
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  17585955 ctcgtgagcttaactcagttgatatagacaatacataatatat 17585997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 36948182 - 36948231
Alignment:
Q  89 gttgttctcgtgagcttaactcatttgataaagacaatacataatatata 138  Q
    |||||||||||||||||||||||||| ||| ||||||| || ||||||||    
T  36948182 gttgttctcgtgagcttaactcatttaatatagacaatgcaaaatatata 36948231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 1877731 - 1877684
Alignment:
Q  90 ttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||| ||||||||||||||||| |||||| ||||||| ||||||||||    
T  1877731 ttgtactcgtgagcttaactcagttgatatagacaatgcataatatat 1877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 35061633 - 35061680
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaac 142  Q
    ||||||||||||  ||| |||||| |||||||||||||||||||||||    
T  35061633 ctcgtgagcttagttcaattgatagagacaatacataatatatacaac 35061680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 40512691 - 40512648
Alignment:
Q  98 gtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||||||||||| ||| || ||||||||||||||||||||||    
T  40512691 gtgagcttaactcagttggtagagacaatacataatatatacaa 40512648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 29293168 - 29293216
Alignment:
Q  89 gttgttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||| ||||||||||||||||| || ||| |||||||| |||||||||    
T  29293168 gttgtcctcgtgagcttaactcagttaatatagacaatatataatatat 29293216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 7081718 - 7081676
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  7081718 ctcgtgagcttagctcagttgataaagacaatacataatatat 7081676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 6470678 - 6470638
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  6470678 cgtgagcttaactcagttgataaagacaatgcataatatat 6470638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 8810637 - 8810679
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||| |||| ||| |||||||||||||||||||||    
T  8810637 ctcgtgagcttagctcagttggtaaagacaatacataatatat 8810679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 14552334 - 14552380
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||||||||    
T  14552334 ctcgtgagcttaactcagttgatagagataatgcataatatatacaa 14552380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 4450261 - 4450301
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  4450261 cgtgagcttagctcagttgataaagacaatgcataatatat 4450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 19581446 - 19581486
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||| |||| ||||||||||| |||||||||||||    
T  19581446 cgtgagcttagctcaattgataaagactatacataatatat 19581486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 47835777 - 47835733
Alignment:
Q  97 cgtgagcttaactcatttgataaagacaatacataatatatacaa 141  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||    
T  47835777 cgtgagtttaactcagttgataaaaacaatacataatatatacaa 47835733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 563195 - 563240
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    ||||||||||||||| |||| ||||||| ||||| |||||||||||    
T  563195 gttctcgtgagcttagctcagttgataaggacaaaacataatatat 563240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 50849140 - 50849095
Alignment:
Q  92 gttctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  50849140 gttctcgtgagcttaactcagttggtaatgacaatgcataatatat 50849095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 41998339 - 41998395
Alignment:
Q  86 taagttgttctcgtgagcttaactcatttgataaagacaatacataatatatacaac 142  Q
    |||| ||| |||||||| |||||||| ||||||  |||||| |||||||||||||||    
T  41998339 taaggtgtcctcgtgagattaactcagttgatagggacaattcataatatatacaac 41998395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 3138 - 3180
Alignment:
Q  95 ctcgtgagcttaactcatttgataaagacaatacataatatat 137  Q
    |||||||||||| |||| ||| |||||||||||||||||||||    
T  3138 ctcgtgagcttagctcagttggtaaagacaatacataatatat 3180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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