View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_1 (Length: 666)

Name: NF10438_low_1
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_1
NF10438_low_1
[»] chr7 (1 HSPs)
chr7 (17-656)||(26944564-26945201)


Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 17 - 656
Target Start/End: Complemental strand, 26945201 - 26944564
Alignment:
Q  17 tttcacactcacctaccaaaaacaaaatagaattataattagatatgaatacatttatctaaatatgcaaaagatgtggcaatcatttctttttgaagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26945201 tttcacactcacctaccaaaaacaaaatagaattataattagatatgaatacatttatctaaatatgcaaaagatgtggcaatcatttctttttgaagta 26945102  T
Q  117 accaattctttttaatataaaatagagtactagaggtactccaagctatatataaaagaagataaatttcacttcaaaaataaaaatattctgataatgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26945101 accaattctttttaatataaaatagagtactagaggtactccaagctatatataaaagaagagaaatttcacttcaaaaataaaaatattctgataatgg 26945002  T
Q  217 aaaggatcttcatataattaacaaacacaatgttctccctttatcccagctagaaatcattaatttccaagagtactgcacttcaatttgtatgtatcta 316  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  26945001 aaaggatcttcatataa----caaacacaatgttctccctttatcccagctagaaatcattaatttccaaga---ctgcacttcaatttgtatgtatcta 26944909  T
Q  317 aaactttatggctcagagataataagtagtaccataggttgctcatccatttgagaagttgaggactcaacgtttcctaactcagagttcattccctcca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26944908 aaactttatggctcagagataataagtagtaccataggttgctcatccatttgagaagttgaggactcaacgtttcctaactcagagttcattccctcca 26944809  T
Q  417 ctttttgcttcaactcttctatgtatttggaggcgtccacaataattgaggctttgttcatctgccaattacccatttcaaattaattaaaggaggtcca 516  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26944808 ctttttgcttcaactcttttatgtatttggaggcgtccacaataattgaggctttgttcatctgccaattacccatttgaaattaattaaaggaggtcca 26944709  T
Q  517 tagttcaatattttctactaa-----aattaacatttccatgtaagaaaaacataagtaatagcattgtatcttcattgtaagaaaaacatatatgctaa 611  Q
    |||||||||||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26944708 tagttcaatattttctactaaaatataattaacatttgcatgtaagaaaaacataagtaatagcattgtatcttcattgtaagaaaaacatatatgctaa 26944609  T
Q  612 ttcttatagcttctgtttagtagattttggttttctcaccctttg 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26944608 ttcttatagcttctgtttagtagattttggttttctcaccctttg 26944564  T

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