View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_10 (Length: 386)
Name: NF10438_low_10
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 45803779 - 45804145
Alignment:
| Q |
19 |
cctatatagtgaagaagaatcaatcaatggtcaagtattatcataacacaacataatggttcaaatattatctatgagtttcccaatagaatctagtcag |
118 |
Q |
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| T |
45803779 |
cctatatagtgaagaagaatcaatcaatggtcaagtattatcataacacaacataatggttcaaatattatctatgagtttcccaatagaatctagtcag |
45803878 |
T |
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| Q |
119 |
tgaaatatttggccaactatatcatataagtatgttggtaaccagaactcaaacctgttttacattgtcatacactgcagaagggtcggtgaaatcgact |
218 |
Q |
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| T |
45803879 |
tgaaatatttggccaactatat-atataagtatgttggtaaccagaactcaaacctgttttacattgtcatacactgcagaagggtcggtgaaatcgact |
45803977 |
T |
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| Q |
219 |
acaaccgctgtggccttggactgcaaattgcaattcaaaaagtcattgtatatacaaaaagattaaagaaatactaattgaataataccaagtttgttgt |
318 |
Q |
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| T |
45803978 |
acaaccgctgtggccttggactgcaaattgcaattcaaaaagtcattgtagatacaaaaagattaaagaaatactaattgaataataccaagtttgttgt |
45804077 |
T |
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| Q |
319 |
tgctaattcacaatttcacattacctgagatatagagcccaaaaccatagtaaggtcatttagtatag |
386 |
Q |
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| T |
45804078 |
tgctaattcacaatttcacattacctgagatatagagcccaaaaccatagtaaggtcatttagtatag |
45804145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 7522712 - 7522776
Alignment:
| Q |
149 |
tatgttggtaaccagaactcaaacctgttttacattgtcatacactgcagaagggtcggtgaaat |
213 |
Q |
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| T |
7522712 |
tatgttgcaaaccagaattcaaacctgttttacattgtcatatattgaagaagggtcgatgaaat |
7522776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 7522875 - 7522926
Alignment:
| Q |
333 |
ttcacattacctgagatatagagcccaaaaccatagtaaggtcatttagtat |
384 |
Q |
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| T |
7522875 |
ttcacattacatgatatacagagcccaaaaccattgtaaagtcatttagtat |
7522926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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