View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_12 (Length: 345)

Name: NF10438_low_12
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_12
NF10438_low_12
[»] chr3 (2 HSPs)
chr3 (16-335)||(1543555-1543876)
chr3 (16-325)||(1540254-1540565)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 1543876 - 1543555
Alignment:
Q  16 gcaacttggccacatacctgtgttataaaacaaaaagaaacaaatattacttaaacgggttaaatattttgtataagataaataataaagttnnnnnnnn 115  Q
    ||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||| |||| ||| ||||||||||||||||| |||||||||            
T  1543876 gcaacttggccactttcctgtgatataaaacaagaagaaacaaatattatttaaaggggtgaaagattttgtataagataaacaataaagttaagaaaag 1543777  T
Q  116 nn--cataatttggtttaccattaacgttagttacaacaaaaaataacaaaataaagaggaccatcacatgaacaaacttaataattttagtcatatttt 213  Q
        ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1543776 aaaacataaattgatttaccattaacgttagttacaacaaaaaataacaaaataaagaggaccatcacatgaacaaacttaataattttagtcatatttt 1543677  T
Q  214 tgtcctaaacttgcaacaaatagaattttatttatctcttatgttgtaagaatcacatgctttgtttatttgcttaataaatttttgcacgtatagatta 313  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  1543676 tctcctaaacttgcaacaaatagaattttatttatctcttatgttgtaagaattacatgctttgtttatttgcttaataaatttttgcacatatagatta 1543577  T
Q  314 taaatttgtcatctttgcccct 335  Q
    |||||||||||| |||||||||    
T  1543576 taaatttgtcatgtttgcccct 1543555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 1540565 - 1540254
Alignment:
Q  16 gcaacttggccacatacctgtgttataaaacaaaaagaaacaaatattacttaaacgggttaaatattttgtataagataaataataaagttnnnnnnnn 115  Q
    ||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||| |||| ||| ||||||||||||||||| |||||||||            
T  1540565 gcaacttggccactttcctgtgatataaaacaagaagaaacaaatattatttaaaggggtgaaagattttgtataagataaacaataaagttaagaaaag 1540466  T
Q  116 nn--cataatttggtttaccattaacgttagttacaacaaaaaataacaaaataaagaggaccatcacatgaacaaacttaataattttagtcatatttt 213  Q
        ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1540465 aaaacataaattgatttaccattaacgttagttacaacaaaaaataacaaaataaagaggatcatcacatgaacaaacttaataattttagtcatatttt 1540366  T
Q  214 tgtcctaaacttgcaacaaatagaattttatttatctcttatgttgtaagaatcacatgctttgtttatttgcttaataaatttttgcacgtatagatta 313  Q
    | ||||||||||||||||| |||||||||||||||||||||| ||||||||| || || ||||||||||||| ||| || |||||||||  |||||||||    
T  1540365 tctcctaaacttgcaacaagtagaattttatttatctcttatattgtaagaaccatatcctttgtttatttgtttattatatttttgcatttatagatta 1540266  T
Q  314 taaatttgtcat 325  Q
      ||||||||||    
T  1540265 ccaatttgtcat 1540254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University