View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_14 (Length: 338)
Name: NF10438_low_14
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 42741572 - 42741883
Alignment:
| Q |
12 |
aaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
111 |
Q |
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| T |
42741572 |
aaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
42741669 |
T |
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| Q |
112 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctt-aacttcattacttccacatgct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42741670 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctttaacttcattacttccacatgct |
42741769 |
T |
|
| Q |
211 |
agcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagcttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741770 |
agcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagcttt |
42741869 |
T |
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| Q |
311 |
gagtgttagatttg |
324 |
Q |
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| T |
42741870 |
gagtgttagatttg |
42741883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 21745696 - 21745918
Alignment:
| Q |
12 |
aaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
111 |
Q |
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| T |
21745696 |
aaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacatt----gtcacttactgattcatca |
21745789 |
T |
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| Q |
112 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745790 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
21745889 |
T |
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| Q |
212 |
gcaacattgtttcaaaacttctcatcatt |
240 |
Q |
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| T |
21745890 |
gcaacattgtttcaaaacttctcatcatt |
21745918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
191 |
cttcattacttccacatgctagcaacattgtttcaaa |
227 |
Q |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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