View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_16 (Length: 331)

Name: NF10438_low_16
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_16
NF10438_low_16
[»] chr6 (33 HSPs)
chr6 (20-316)||(27604375-27604672)
chr6 (19-316)||(26802661-26802956)
chr6 (19-312)||(27677290-27677582)
chr6 (19-312)||(27592694-27592988)
chr6 (19-312)||(27706077-27706370)
chr6 (19-312)||(27679165-27679459)
chr6 (20-184)||(27698297-27698461)
chr6 (19-147)||(27718219-27718347)
chr6 (19-147)||(27610842-27610970)
chr6 (20-316)||(27427283-27427573)
chr6 (19-217)||(26884384-26884580)
chr6 (19-138)||(28786497-28786616)
chr6 (19-138)||(28792618-28792737)
chr6 (19-138)||(26861832-26861951)
chr6 (19-138)||(28781358-28781477)
chr6 (19-204)||(27530983-27531165)
chr6 (32-174)||(25538772-25538914)
chr6 (32-316)||(26646711-26646990)
chr6 (32-316)||(26752679-26752958)
chr6 (32-162)||(25579951-25580081)
chr6 (32-162)||(26143097-26143227)
chr6 (32-138)||(27214652-27214758)
chr6 (32-138)||(27234470-27234576)
chr6 (244-316)||(28786677-28786751)
chr6 (244-316)||(28792798-28792872)
chr6 (270-316)||(27698255-27698301)
chr6 (19-57)||(27724775-27724813)
chr6 (32-129)||(26656221-26656318)
chr6 (32-129)||(26762192-26762289)
chr6 (247-316)||(28781543-28781614)
chr6 (32-74)||(25506897-25506939)
chr6 (32-129)||(27337923-27338020)
chr6 (32-129)||(27398663-27398760)
[»] scaffold0349 (2 HSPs)
scaffold0349 (19-147)||(3260-3389)
scaffold0349 (19-147)||(14196-14324)
[»] scaffold0277 (4 HSPs)
scaffold0277 (19-129)||(4529-4639)
scaffold0277 (19-129)||(13490-13600)
scaffold0277 (244-309)||(4390-4457)
scaffold0277 (247-316)||(13344-13415)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-316)||(59790-60080)
[»] chr4 (10 HSPs)
chr4 (20-316)||(18073982-18074272)
chr4 (38-316)||(18731169-18731440)
chr4 (248-316)||(18655142-18655211)
chr4 (248-316)||(18723750-18723819)
chr4 (248-314)||(18699067-18699134)
chr4 (49-138)||(18723921-18724010)
chr4 (49-129)||(18655322-18655402)
chr4 (248-298)||(18679250-18679301)
chr4 (39-129)||(18699245-18699335)
chr4 (39-138)||(18679403-18679502)
[»] scaffold0419 (2 HSPs)
scaffold0419 (19-129)||(7744-7854)
scaffold0419 (247-316)||(7929-8000)
[»] chr1 (6 HSPs)
chr1 (244-317)||(268020-268094)
chr1 (32-137)||(28127516-28127621)
chr1 (41-137)||(28164200-28164296)
chr1 (58-129)||(268202-268273)
chr1 (250-318)||(28164031-28164100)
chr1 (250-317)||(28127332-28127400)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 27604672 - 27604375
Alignment:
Q  20 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 119  Q
    |||||| |||||||||| |||| ||||||||||||||| || | |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27604672 aagcattggctgagcataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttc 27604573  T
Q  120 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 219  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27604572 cggctaccatgatagtcctcctgggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcat 27604473  T
Q  220 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27604472 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatatt 27604375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 26802661 - 26802956
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  26802661 gaagcattggctgagcatgaaaaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgt 26802760  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 218  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||    
T  26802761 ccggctaccatgatagtcctcctcggtacccaactttacttaaatcctatttttcccttttatattttatttcttcaacttcaatttcccaataatctca 26802860  T
Q  219 tattcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    | || ||||||||||| |   |||||||||| |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||    
T  26802861 tcttaaaggttaaatggg---aaatacctttcttatatacgtttttaaacaagtattagttatttatatgttgaaatagttagaaatgtataatatatt 26802956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 27677582 - 27677290
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  27677582 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27677483  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 218  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||    
T  27677482 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctca 27677383  T
Q  219 tattcaaggttaaatgagatcaaataccttttttatttacgtttttaaaa--agtattagttatttatatgtcacaatagttagaaatgtataata 312  Q
    | || ||||||||| | |   ||||||||||||||| |||  ||||||||  | |||||||||||||||||||  |||||||||||||||||||||    
T  27677382 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaaagtactattagttatttatatgtcgaaatagttagaaatgtataata 27677290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 27592988 - 27592694
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||| |    
T  27592988 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgt 27592889  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 218  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||    
T  27592888 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctca 27592789  T
Q  219 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataata 312  Q
    | || ||||||||| | |   ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  |||||||||||||||||||||    
T  27592788 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataata 27592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 27706370 - 27706077
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  27706370 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27706271  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 218  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||    
T  27706270 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctca 27706171  T
Q  219 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataata 312  Q
    | || ||| ||||| |     ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  |||||||||||||| ||||||    
T  27706170 tcttaaagtttaaagg----gaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgaataata 27706077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 27679165 - 27679459
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||  |||||||||||| ||||||||||| |    
T  27679165 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgt 27679264  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 218  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||    
T  27679265 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctca 27679364  T
Q  219 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataata 312  Q
    | || ||||||||| | |   ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  |||||||||||||||||||||    
T  27679365 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataata 27679459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 27698461 - 27698297
Alignment:
Q  20 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 119  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||    
T  27698461 aagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtc 27698362  T
Q  120 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtatt 184  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||    
T  27698361 cggctaccatgatagtcctcccaggtacccaactttacttaaatcctatatttcccttttgtatt 27698297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 27718347 - 27718219
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  27718347 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgt 27718248  T
Q  119 ccggctaccatgatagtcctcctaggtac 147  Q
    ||||||||||||||||||||||| |||||    
T  27718247 ccggctaccatgatagtcctcctgggtac 27718219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 27610970 - 27610842
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  27610970 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaactttt 27610871  T
Q  119 ccggctaccatgatagtcctcctaggtac 147  Q
    ||||||||||||||||||||||| |||||    
T  27610870 ccggctaccatgatagtcctcctgggtac 27610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 27427573 - 27427283
Alignment:
Q  20 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 119  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  27427573 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 27427474  T
Q  120 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 219  Q
    | |||||||||||  |  || | ||||| |    |||||||| ||||  |||| | ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  27427473 cagctaccatgatgatagtcatgggtacgcctatttacttaattcct-gttttgctttttgcatttaatttatttaatttctattcctcaata---ccat 27427378  T
Q  220 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
     || |||  ||||||   |  || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| ||||||||||||||||    
T  27427377 cttaaagcctaaatg---tgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatatt 27427283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 26884384 - 26884580
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||| || | ||||||||| |    
T  26884384 gaagcattggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 26884483  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttc-aattgcccaataatctc 217  Q
    |||||||||||  |||   || | ||||  | || ||||||||||| |||||| |  |||| |||||||||| || |||||| |||| ||||||||||||    
T  26884484 ccggctaccattttag---tcttgggtatcccactttacttaaatcatattttccttttttatattttctttctttaatttcaaattccccaataatctc 26884580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 28786497 - 28786616
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28786497 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28786596  T
Q  119 ccggctaccatgatagtcct 138  Q
    |||||||||||  |||||||    
T  28786597 ccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 28792618 - 28792737
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28792618 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28792717  T
Q  119 ccggctaccatgatagtcct 138  Q
    |||||||||||  |||||||    
T  28792718 ccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 26861832 - 26861951
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||| |||||||||| |||||||||||||||| | | |||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| |    
T  26861832 gaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgt 26861931  T
Q  119 ccggctaccatgatagtcct 138  Q
    | |||||||||  |||||||    
T  26861932 caggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 28781358 - 28781477
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||  ||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28781358 gaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28781457  T
Q  119 ccggctaccatgatagtcct 138  Q
    |||||||||||  |||||||    
T  28781458 ccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 27531165 - 27530983
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    |||||||  |||| |||| |||| | |||||||||||||||| | ||||  ||||||||||||| ||||||||  ||||||||||| || |||||||| |    
T  27531165 gaagcattagctgtgcataaaaaaaagtttcaaaatgataaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgt 27531066  T
Q  119 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaatt 204  Q
    | ||| | ||| |||  | |    ||||  | || |||||||||||||||||||||||||| |||||||||| || ||||||||||    
T  27531065 ctggccagcattataaacatg---ggtagcccactttacttaaatcctatttttcccttttatattttctttctttaatttcaatt 27530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 25538772 - 25538914
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||||| |||||||||||||| || |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  25538772 agcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatta 25538871  T
Q  132 tagtcctcctaggtactcaacattacttaaatcctatttttcc 174  Q
    |||||||| | ||||| | || ||||||||||| | |||||||    
T  25538872 tagtcctcatgggtaccccactttacttaaatcttgtttttcc 25538914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 316
Target Start/End: Original strand, 26646711 - 26646990
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||| ||| |||| || |||||| | |||||||||| |||  | ||||| | ||||||  ||||||||| ||| ||||||||||| ||||| |||||| |    
T  26646711 agcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccatta 26646810  T
Q  132 tagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaa 231  Q
    |||   |||| ||||| | || ||||||||| | | ||||||| |||| ||||||||||||| |||||   || | ||| |||||||| || ||| ||||    
T  26646811 tag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatttaattttttttccacaa-aatctcatcttaaagcttaa 26646906  T
Q  232 at-gagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    || |  | || |||   |||||||| | ||||||||| |||||| | |||||||||||||| || |||||||| |||||||||||||    
T  26646907 ataggaaacacata---tttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26646990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 316
Target Start/End: Original strand, 26752679 - 26752958
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||| ||| |||| || |||||| | |||||||||| |||  | ||||| | ||||||  ||||||||| ||| ||||||||||| ||||| |||||| |    
T  26752679 agcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccatta 26752778  T
Q  132 tagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaa 231  Q
    |||   |||| ||||| | || ||||||||| | | ||||||| |||| ||||||||||||| |||||   || | ||| |||||||| || ||| ||||    
T  26752779 tag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatttaattttttttccacaa-aatctcatcttaaagcttaa 26752874  T
Q  232 at-gagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    || |  | || |||   |||||||| | ||||||||| |||||| | |||||||||||||| || |||||||| |||||||||||||    
T  26752875 ataggaaacacata---tttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 25579951 - 25580081
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||||| |||||||||||||| |  |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  25579951 agcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcatta 25580050  T
Q  132 tagtcctcctaggtactcaacattacttaaa 162  Q
    |||||||| | ||||| | || |||||||||    
T  25580051 tagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 26143097 - 26143227
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||||| |||||||||||||| |  |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  26143097 agcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatta 26143196  T
Q  132 tagtcctcctaggtactcaacattacttaaa 162  Q
    |||||||| | ||||| | || |||||||||    
T  26143197 tagtcctcatgggtaccccactttacttaaa 26143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 27214652 - 27214758
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||||| |||||||||||||| | ||| ||||||||||| ||||||||  ||||||  | ||||| | ||| ||||||||||| || ||||| ||| |    
T  27214652 agcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatta 27214751  T
Q  132 tagtcct 138  Q
    |||||||    
T  27214752 tagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 27234576 - 27234470
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||||| |||||||||||||| | ||| ||||||||||| ||||||||  ||||||  | ||||| | ||| ||||||||||| || ||||| ||| |    
T  27234576 agcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatta 27234477  T
Q  132 tagtcct 138  Q
    |||||||    
T  27234476 tagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 28786677 - 28786751
Alignment:
Q  244 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    ||||||| |||||||||||||||| ||||||| | |||||| ||||||| |||||||||||||||||| ||||||    
T  28786677 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatatt 28786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 28792798 - 28792872
Alignment:
Q  244 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    ||||||| |||||||||||||||| ||||||| | |||||| ||||||| |||||||||||||||||| ||||||    
T  28792798 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatatt 28792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 27698301 - 27698255
Alignment:
Q  270 gtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||    
T  27698301 gtattagttatttatatgtcgaaatagttagaaatttataatatatt 27698255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 27724813 - 27724775
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgat 57  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  27724813 gaagcattggctgagcatgaaaagaggtttcaaaatgat 27724775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 26656221 - 26656318
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||||||||| ||| |||||| | ||| |||||||| |||||||| ||| ||||||  ||||||||| | | ||||| ||||| || |||||||||    
T  26656221 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 26656318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 26762192 - 26762289
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||||||||| ||| |||||| | ||| |||||||| |||||||| ||| ||||||  ||||||||| | | ||||| ||||| || |||||||||    
T  26762192 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 26762289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 28781543 - 28781614
Alignment:
Q  247 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    |||| |||||||||||||||| || |||| | |||||| ||||||| |||||||||||||||||| ||||||    
T  28781543 ttttctatttacgtttttaaacaattatttaattatttttatgtcaaaatagttagaaatgtatactatatt 28781614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 25506939 - 25506897
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagag 74  Q
    |||||||| ||| |||||||||| |||||||||||||||||||    
T  25506939 agcatgaagagaagtttcaaaataataagaaaaacatggagag 25506897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 27338020 - 27337923
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||||| | | ||| |||||| | ||| ||||||||||||||||| ||  ||||||  ||||||| | ||| ||||||||||| |||||| |||||    
T  27338020 agcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccat 27337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 27398760 - 27398663
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||||| | | ||| |||||| | ||| ||||||||||||||||| ||  ||||||  ||||||| | ||| ||||||||||| |||||| |||||    
T  27398760 agcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccat 27398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 3389 - 3260
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaa-catggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttt 117  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  3389 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttg 3290  T
Q  118 tccggctaccatgatagtcctcctaggtac 147  Q
    |||||||||||||||||||||||| |||||    
T  3289 tccggctaccatgatagtcctcctgggtac 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 14324 - 14196
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  14324 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 14225  T
Q  119 ccggctaccatgatagtcctcctaggtac 147  Q
    ||||||||||||||||||||||| |||||    
T  14224 ccggctaccatgatagtcctcctgggtac 14196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 4639 - 4529
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  4639 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 4540  T
Q  119 ccggctaccat 129  Q
    |||||||||||    
T  4539 ccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 13600 - 13490
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||  ||||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  13600 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 13501  T
Q  119 ccggctaccat 129  Q
    |||||||||||    
T  13500 ccggctaccat 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 4457 - 4390
Alignment:
Q  244 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtata 309  Q
    ||||||| |||||||||||||||| ||||||| | ||| || ||||||||||||||||||||||||||    
T  4457 accttttatatttacgtttttaaacaagtatttaattacttttatgtcacaatagttagaaatgtata 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 13415 - 13344
Alignment:
Q  247 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    |||| |||||||||||||||| ||||||| | ||| || ||||||| |||||||||||||||||| ||||||    
T  13415 ttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatatt 13344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 59790 - 60080
Alignment:
Q  20 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 119  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  59790 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 59889  T
Q  120 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 219  Q
    | |||||||||||  |  || | ||||| |    |||||||| ||||  |||| | ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  59890 cagctaccatgatgatagtcatgggtacgcctatttacttaattcct-gttttgctttttgcatttaatttatttaatttctattcctcaata---ccat 59985  T
Q  220 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
     || |||  ||||||   |  || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| ||||||||||||||||    
T  59986 cttaaagcctaaatg---tgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatatt 60080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 18073982 - 18074272
Alignment:
Q  20 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 119  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  18073982 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 18074081  T
Q  120 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 219  Q
    | |||||||||||  |  || | ||||| |    |||||||| ||||  |||| | ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  18074082 cagctaccatgatgatagtcatgggtacgcctatttacttaattcct-gttttgctttttgcatttaatttatttaatttctattcctcaata---ccat 18074177  T
Q  220 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
     || |||  ||||||   |  || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| ||||||||||||||||    
T  18074178 cttaaagcctaaatg---tgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatatt 18074272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 316
Target Start/End: Complemental strand, 18731440 - 18731169
Alignment:
Q  38 aaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcc 137  Q
    ||||||| || |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||     
T  18731440 aaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtca 18731341  T
Q  138 tcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaaatgaga 237  Q
    |    |||||||  | |||||||| || | |||| || ||||| ||||| |||||| |||||  ||| | |||||||  ||| || |||  |||||  ||    
T  18731340 tg---ggtactcctctttacttaattcttgtttt-ccattttgcattttatttatttaatttttattcctcaataataccatcttaaagcctaaattgga 18731245  T
Q  238 tcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
       || ||||||||| ||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  18731244 ---aacacctttttt-tttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 18731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 18655211 - 18655142
Alignment:
Q  248 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  18655211 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 18655142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 18723819 - 18723750
Alignment:
Q  248 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  18723819 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 18723750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 18699134 - 18699067
Alignment:
Q  248 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatata 314  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||    
T  18699134 tttttaattacgtttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatata 18699067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 18724010 - 18723921
Alignment:
Q  49 caaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcct 138  Q
    |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18724010 caaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 18655402 - 18655322
Alignment:
Q  49 caaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||    
T  18655402 caaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccat 18655322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 18679301 - 18679250
Alignment:
Q  248 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagtt 298  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  18679301 tttttatttacgtttttaaacaagtattagttatttataagtcaaaatagtt 18679250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 18699335 - 18699245
Alignment:
Q  39 aaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    |||||| || |||||| | ||||||||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||| ||||||||||||    
T  18699335 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccat 18699245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 18679502 - 18679403
Alignment:
Q  39 aaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcct 138  Q
    |||||| || |||||| | || |||||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18679502 aaagagtttccaaaataacaataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagtcct 18679403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 7744 - 7854
Alignment:
Q  19 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 118  Q
    ||||||| |||||  ||||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  7744 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 7843  T
Q  119 ccggctaccat 129  Q
    |||||||||||    
T  7844 ccggctaccat 7854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 7929 - 8000
Alignment:
Q  247 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatatt 316  Q
    |||| |||||||||||||||| ||||||| | ||| || ||||||| |||||||||||||||||| ||||||    
T  7929 ttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatatt 8000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 268094 - 268020
Alignment:
Q  244 accttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattt 317  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||| |  |||||||||||| |||||||||||||    
T  268094 accttttttatttacgtttctaaataagtattagttgtttatatgacgaaatagttagaaacgtataatatattt 268020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 28127621 - 28127516
Alignment:
Q  32 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 131  Q
    |||||| | ||||||| |||||| | ||||||||||||||| | ||||| | ||||||  | ||||| | ||| ||||||||||| |||||||||||| |    
T  28127621 agcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatta 28127522  T
Q  132 tagtcc 137  Q
    ||||||    
T  28127521 tagtcc 28127516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 28164296 - 28164200
Alignment:
Q  41 agaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcc 137  Q
    ||||||| |||||| | ||||||||||||||| | ||||| | ||||||  | ||||| | ||| ||||||||||| |||||||||||| |||||||    
T  28164296 agaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtcc 28164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 268273 - 268202
Alignment:
Q  58 aagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 129  Q
    ||||||||||||||| ||||||| | ||||||  ||||||||| ||| ||| ||||||| || |||||||||    
T  268273 aagaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccat 268202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 28164100 - 28164031
Alignment:
Q  250 tttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatatttg 318  Q
    |||||||| ||||||||| |||||| || ||||||||||||| ||||||||||  ||||| || ||||||    
T  28164100 tttatttatgtttttaaacaagtataagatatttatatgtcaaaatagttagagttgtatgatgtatttg 28164031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 28127400 - 28127332
Alignment:
Q  250 tttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattt 317  Q
    |||||||| ||||||||| |||||| || ||||||||||||| |||||| |||  |||||||| |||||    
T  28127400 tttatttatgtttttaaacaagtataaggtatttatatgtcaaaatagtcagagttgtataatgtattt 28127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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