View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_18 (Length: 279)

Name: NF10438_low_18
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_18
NF10438_low_18
[»] chr2 (9 HSPs)
chr2 (20-264)||(14435856-14436098)
chr2 (51-269)||(30928091-30928298)
chr2 (176-265)||(36756959-36757048)
chr2 (15-77)||(30928028-30928088)
chr2 (182-243)||(10748045-10748106)
chr2 (182-243)||(37670734-37670795)
chr2 (191-252)||(42700143-42700204)
chr2 (192-243)||(14786012-14786063)
chr2 (153-264)||(16468366-16468477)
[»] chr3 (9 HSPs)
chr3 (15-257)||(2333468-2333710)
chr3 (49-269)||(34297454-34297675)
chr3 (153-243)||(43892076-43892166)
chr3 (191-265)||(52964153-52964227)
chr3 (191-265)||(54548330-54548404)
chr3 (183-243)||(4741615-4741675)
chr3 (187-259)||(29210867-29210939)
chr3 (153-243)||(47105849-47105939)
chr3 (191-265)||(20537702-20537776)
[»] chr4 (11 HSPs)
chr4 (20-257)||(55641002-55641236)
chr4 (20-257)||(42661365-42661597)
chr4 (183-265)||(54421412-54421494)
chr4 (192-265)||(43733915-43733988)
chr4 (191-243)||(21257050-21257102)
chr4 (191-255)||(38761397-38761461)
chr4 (182-243)||(42327927-42327988)
chr4 (182-265)||(32499541-32499624)
chr4 (182-265)||(3914758-3914841)
chr4 (191-257)||(5185491-5185557)
chr4 (183-243)||(1481027-1481087)
[»] chr8 (5 HSPs)
chr8 (191-265)||(5896315-5896389)
chr8 (191-255)||(16484167-16484231)
chr8 (182-243)||(11629495-11629556)
chr8 (182-243)||(9180755-9180816)
chr8 (182-243)||(34752714-34752775)
[»] chr7 (11 HSPs)
chr7 (118-259)||(5645219-5645360)
chr7 (184-259)||(31802462-31802537)
chr7 (182-259)||(513847-513924)
chr7 (191-266)||(27745732-27745807)
chr7 (198-266)||(18221471-18221539)
chr7 (182-265)||(41147749-41147832)
chr7 (206-265)||(43970061-43970120)
chr7 (194-252)||(36422696-36422754)
chr7 (182-252)||(41605363-41605433)
chr7 (182-259)||(12350745-12350822)
chr7 (153-218)||(43203527-43203592)
[»] chr1 (12 HSPs)
chr1 (191-255)||(27643382-27643446)
chr1 (182-265)||(33978185-33978268)
chr1 (191-265)||(28037649-28037723)
chr1 (182-243)||(39501120-39501181)
chr1 (180-243)||(38599020-38599083)
chr1 (187-265)||(7386664-7386742)
chr1 (153-243)||(23809444-23809534)
chr1 (193-241)||(15846206-15846254)
chr1 (193-241)||(15849590-15849638)
chr1 (153-243)||(44139697-44139787)
chr1 (182-243)||(14650988-14651049)
chr1 (182-243)||(14660779-14660840)
[»] scaffold0996 (1 HSPs)
scaffold0996 (182-265)||(1551-1634)
[»] chr5 (6 HSPs)
chr5 (182-252)||(13020936-13021006)
chr5 (182-243)||(13092469-13092530)
chr5 (182-265)||(23151264-23151347)
chr5 (191-265)||(28499180-28499254)
chr5 (165-242)||(7274511-7274588)
chr5 (204-265)||(10813148-10813209)
[»] chr6 (1 HSPs)
chr6 (182-243)||(10158979-10159040)
[»] scaffold0024 (1 HSPs)
scaffold0024 (184-243)||(69079-69138)
[»] scaffold0067 (1 HSPs)
scaffold0067 (182-265)||(10987-11070)
[»] scaffold0007 (1 HSPs)
scaffold0007 (182-244)||(188404-188466)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 14436098 - 14435856
Alignment:
Q  20 gctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactacta 119  Q
    ||||||||||||||||||| ||||  |||||||||  |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  14436098 gctagaagctatgaagatgacaat--ctccaatggtgtgcataatgttatatttgaaactgacggtagatccttggtgaatgcactttactctactacta 14436001  T
Q  120 ctcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataa 219  Q
    ||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||| |||| | ||||||||    
T  14436000 ctcccctcaatgaatttggagaccttgtggttcaatgtaaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtatgtaaataa 14435901  T
Q  220 ggttgctcatagtattgctagagccgccttatctcatcctcgccc 264  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  14435900 ggttgctcatagtattgctagagccgccttatctcctcctcgccc 14435856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 30928091 - 30928298
Alignment:
Q  51 atggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtgat 150  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||    
T  30928091 atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccctcaatgaatttggagatcttgtgat 30928190  T
Q  151 tcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgcctta 250  Q
    ||||||||||||||||||           | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30928191 tcaatgtaaaaatatctt-----------acgactttgtggcgtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgcctta 30928279  T
Q  251 tctcatcctcgcccctttg 269  Q
    |||||||||||||||||||    
T  30928280 tctcatcctcgcccctttg 30928298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 36757048 - 36756959
Alignment:
Q  176 aatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||||||||| ||||||||| || |||||||||  ||||| |||||||||||||||||||||||  ||||||| |||||| |||||    
T  36757048 aatcatgactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccc 36756959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 30928028 - 30928088
Alignment:
Q  15 gggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaa 77  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||    
T  30928028 gggctgctagaagctatgaagatggcaat--ctccaatggcatgcataatgttttttttgaaa 30928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 10748045 - 10748106
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10748045 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10748106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 37670795 - 37670734
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||| ||||||  |||||| |||| ||||||||||||||||||    
T  37670795 gactttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagc 37670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 42700204 - 42700143
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 252  Q
    ||||||||||||| |||||||  ||||| ||| |||||||||||||||||||| | ||||||    
T  42700204 gtgtcgtttgttatgaggcaaacaaatagggtagctcatagtattgctagagcggtcttatc 42700143  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 14786012 - 14786063
Alignment:
Q  192 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||| |||||||||||||| ||||   |||||||||||||||||||||||    
T  14786012 tgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagc 14786063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 264
Target Start/End: Complemental strand, 16468477 - 16468366
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 252  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||| ||| ||| |  || |||||||  ||||||||||| ||  ||||    
T  16468477 aatgtaaaattctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatc 16468378  T
Q  253 tcatcctcgccc 264  Q
    | ||||| ||||    
T  16468377 taatcctagccc 16468366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 2333468 - 2333710
Alignment:
Q  15 gggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctac 114  Q
    |||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  2333468 gggctgctagaagctatggagatggcaat--ctccaatggcatgcataatgttatatttgaaactgacagtagatccatggagaatgcactctactctac 2333565  T
Q  115 tactactcccctaaataattttggagacctt--gtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaag 212  Q
    ||| |||||||| ||| | ||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||| || ||| |||||||||||||||||    
T  2333566 taccactcccctcaatgaatttggagaccttttgtgattcaatgtaaaaacatcttgttaagtaatcacgactttatgatgttgtttgttaggaggcaag 2333665  T
Q  213 taaataaggttgctcatagtattgctagagccgccttatctcatc 257  Q
    ||||||||||||| |||||||||| ||| ||  ||||||||||||    
T  2333666 taaataaggttgcacatagtattgttagtgctaccttatctcatc 2333710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 34297675 - 34297454
Alignment:
Q  49 caatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtg 148  Q
    |||||| |||||| ||||||| |||||||||||||||||||| || |||||| |||||||| |||||||||||| ||| ||| | |||| |||| |||||    
T  34297675 caatggtatgcatgatgttatctttgaaactgacagtagatctttagtgaatgcactctacactactactactctcctcaatgaatttgaagactttgtg 34297576  T
Q  149 attcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataagg-ttgctcatagtattgctagagccgcc 247  Q
    ||||  ||||||||||| |||| ||||||||| |||||| || |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  34297575 attcggtgtaaaaatattttgtcaagtaatcacgactttatgatgtcgtttgttaggaggcaagtaaataaggtttgctcatattattgttagagccgcc 34297476  T
Q  248 ttatctcatcctcgcccctttg 269  Q
    |||||||||| || ||||||||    
T  34297475 ttatctcatcttcacccctttg 34297454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 43892076 - 43892166
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||  || |||||||  |||||||||||    
T  43892076 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgctagagc 43892166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 52964227 - 52964153
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| |||||| |  |||||||||||||| |||||    
T  52964227 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccc 52964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 54548404 - 54548330
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| | ||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||| |||||    
T  54548404 gtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccc 54548330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 4741675 - 4741615
Alignment:
Q  183 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||| ||||||| |||||||||||| |  ||||| |||||||||||||||||||||||    
T  4741675 actttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagc 4741615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 29210939 - 29210867
Alignment:
Q  187 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 259  Q
    |||||||||||||||| ||||||||| |||||| ||  ||||||| |||||||||||| | |||||| |||||    
T  29210939 tgtggtgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcct 29210867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 47105849 - 47105939
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||||| | |||||||||||||||  |||| ||| ||||||||||| |||||||||  |||||| || |||||||  ||||| |||||    
T  47105849 aatgtaaaactctcttgttaagtaatcccgactatgtagtgtcgtttgtgaggaggcaaacaaataatgtggctcataacattgcaagagc 47105939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 20537702 - 20537776
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||||||| ||||||||| ||||||||| |||||||  || |||||||  |||||||| || ||| |||||    
T  20537702 gtgtcgtttgtttggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagcccc 20537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 55641002 - 55641236
Alignment:
Q  20 gctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactacta 119  Q
    ||||||||||||||||||||||||   | |||||| |||||| | |||||||||||||| |||| |||||| || |  ||| |||| ||| |||||| ||    
T  55641002 gctagaagctatgaagatggcaatt--ttcaatggtatgcatgaagttatatttgaaacggacaatagatctttagaaaatgcactatacactactaata 55641099  T
Q  120 ctcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataa 219  Q
    ||||| | ||| | |||  | ||||||||||||||||||||||||||  ||||| ||||||  | ||| ||||| ||||| |||  |  |||||||||||    
T  55641100 ctcccttcaatgaatttaaaaaccttgtgattcaatgtaaaaatatc--gttaactaatcacaattttatggtgccgttttttaacatacaagtaaataa 55641197  T
Q  220 ggttg-ctcatagtattgctagagccgccttatctcatc 257  Q
    |||||  ||||| |||||||||||| |||||||||||||    
T  55641198 ggttgtttcataatattgctagagctgccttatctcatc 55641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 42661365 - 42661597
Alignment:
Q  20 gctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactacta 119  Q
    |||||||||||| |||||||||||   | |||||| |||||| | |||||||||||| | |||| |||||| || || ||| |||| ||| |||||||||    
T  42661365 gctagaagctataaagatggcaatt--ttcaatggtatgcatgaagttatatttgaa-cggacactagatctttagtaaatgcactatacactactacta 42661461  T
Q  120 ctcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataa 219  Q
    ||||| | ||| | |||  | |||||||||||| |||||||||||||  | ||| ||||||  | ||||||||| ||||| |||  |  |||||||||||    
T  42661462 ctcccttcaatgaatttaaaaaccttgtgattccatgtaaaaatatc--gataactaatcacaattttgtggtgccgttttttaacatacaagtaaataa 42661559  T
Q  220 ggttgctcatagtattgctagagccgccttatctcatc 257  Q
    |||||||| || |||||||||||| |||||||||||||    
T  42661560 ggttgctcgtaatattgctagagctgccttatctcatc 42661597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 54421494 - 54421412
Alignment:
Q  183 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| ||||||||| || |||||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| |||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccc 54421412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 43733915 - 43733988
Alignment:
Q  192 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||| | | |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| |||||    
T  43733915 tgtcgtttatcaagaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccc 43733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 21257050 - 21257102
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  21257050 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 21257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 38761461 - 38761397
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 255  Q
    ||||||||||||| || |||||  |||||||||||||||||||||||||||||  ||||||||||    
T  38761461 gtgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagcatccttatctca 38761397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 42327988 - 42327927
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  42327988 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 42327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 32499541 - 32499624
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  32499541 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 32499624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 3914758 - 3914841
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||| ||||||| |||| || ||||| |||||||||||||| ||| |||||| |||||  | |||| ||||||| |||||    
T  3914758 gactttgtagtgtcgtatgtttgggggcaaataaataaggttgcttataatattgccagagcttctttatgtcatcctagcccc 3914841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 5185557 - 5185491
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatc 257  Q
    ||||||| | ||||||| ||||  |||| ||||||||||||||| ||||||||  ||||||||||||    
T  5185557 gtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatc 5185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 1481027 - 1481087
Alignment:
Q  183 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||| ||||||| || ||||||||||| |||||  ||| |||||||||||| ||||||    
T  1481027 actttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattgttagagc 1481087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 5896389 - 5896315
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||||||||||||||||| |||||  || |||||||||||||||||||| ||||||||||||||| |||||    
T  5896389 gtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccc 5896315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 16484231 - 16484167
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 255  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||||    
T  16484231 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctca 16484167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 11629495 - 11629556
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  11629495 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagc 11629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 9180816 - 9180755
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  9180816 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 9180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 34752775 - 34752714
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||   ||||||||||||||||||||||    
T  34752775 gactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagc 34752714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 5645219 - 5645360
Alignment:
Q  118 tactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaat 217  Q
    |||||| || ||||| ||||| ||||||||| |||||||||||    | ||||||||||| |  || ||||| |||||||||||| | ||| ||| ||||    
T  5645219 tactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgttaagtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaat 5645318  T
Q  218 aaggttgctcatagtattgctagagccgccttatctcatcct 259  Q
    ||| ||||||||||||||  |||||| | |||||||||||||    
T  5645319 aagattgctcatagtattattagagctgtcttatctcatcct 5645360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 31802462 - 31802537
Alignment:
Q  184 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 259  Q
    |||||| ||||||| |||| |||||||||  |||||||||||||||||||||||||||||  |||||| |||||||    
T  31802462 ctttgtagtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcct 31802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 513847 - 513924
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 259  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| |||||||    
T  513847 gactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcct 513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 27745807 - 27745732
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccct 266  Q
    ||||||||||||| |||| |||  |||||||||||||||||||| ||||||||  |||||||||| ||| ||||||    
T  27745807 gtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccct 27745732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 18221539 - 18221471
Alignment:
Q  198 ttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccct 266  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||  |||||||||| ||| ||||||    
T  18221539 ttgttaagaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccct 18221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 41147749 - 41147832
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  41147749 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 41147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 43970061 - 43970120
Alignment:
Q  206 aggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||  ||||| |||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccc 43970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 36422696 - 36422754
Alignment:
Q  194 tcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 252  Q
    ||||||||| ||||||||||||||||||| | |||| ||||| ||||||||| ||||||    
T  36422696 tcgtttgtttggaggcaagtaaataaggtagatcatggtatttctagagccgtcttatc 36422754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 41605363 - 41605433
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 252  Q
    |||||||| ||||||| ||||  |||| | | ||||||||||||||||||||||||||||||  |||||||    
T  41605363 gactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatc 41605433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 12350822 - 12350745
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 259  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  |||||||||||    
T  12350822 gactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcct 12350745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 43203592 - 43203527
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaata 218  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||    
T  43203592 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaata 43203527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 27643446 - 27643382
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 255  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||||    
T  27643446 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctca 27643382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 33978268 - 33978185
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||| ||||| | |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  33978268 gactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 33978185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 28037649 - 28037723
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||  | |||||||||||| |||||    
T  28037649 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccc 28037723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 39501120 - 39501181
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||| ||||||||||||||||    
T  39501120 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagc 39501181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 38599020 - 38599083
Alignment:
Q  180 atgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||||  ||||| | ||||||||||||||  ||||| |||||||||||||||||||||||    
T  38599020 atgactttgatgtgtcatatgttaggaggcaagataataaagttgctcatagtattgctagagc 38599083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 7386664 - 7386742
Alignment:
Q  187 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||| |||||||||  |||||||| |||||| || |||||||| |||||||||||| | |||||| ||||| |||||    
T  7386664 tgtggtatcgtttgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccc 7386742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 23809444 - 23809534
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||||| | ||||||||||||||   |||| ||| |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  23809444 aatgtaaaactctcttgttaagtaattccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 23809534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 15846254 - 15846206
Alignment:
Q  193 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 241  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15846254 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15846206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 15849638 - 15849590
Alignment:
Q  193 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 241  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15849638 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 44139697 - 44139787
Alignment:
Q  153 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    ||||||||| | ||||||||| |||||  |||| | | |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  44139697 aatgtaaaactctcttgttaaataatcccgactatatagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 44139787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 14650988 - 14651049
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14650988 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14651049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 14660779 - 14660840
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14660779 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14660840  T

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Target: scaffold0996 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 1634 - 1551
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  1634 gactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 1551  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 13021006 - 13020936
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 252  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  13021006 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatc 13020936  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 13092530 - 13092469
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  13092530 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13092469  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 23151264 - 23151347
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  23151264 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 23151347  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 28499180 - 28499254
Alignment:
Q  191 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  28499180 gtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 28499254  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 7274511 - 7274588
Alignment:
Q  165 tcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagag 242  Q
    |||||||||||||||  |||| ||| ||||||||| |||||||||||| |||||  || ||||||| |||||| ||||    
T  7274511 tcttgttaagtaatcccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcataatattgcgagag 7274588  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 10813209 - 10813148
Alignment:
Q  204 ggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||||  |||| ||||||||||||||| ||||||||  |||||||||||||| |||||    
T  10813209 ggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccc 10813148  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 10159040 - 10158979
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10159040 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10158979  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 69138 - 69079
Alignment:
Q  184 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 243  Q
    |||||| ||||||| ||||||||| |||| |||||| |||||||||||||| ||||||||    
T  69138 ctttgttgtgtcgtgtgttaggagacaagcaaataaagttgctcatagtatcgctagagc 69079  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 11070 - 10987
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 265  Q
    |||||||  ||||||| |||||||||||||| |||||  ||||||| |||||||||| ||||  |  ||||||||||| |||||    
T  11070 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccc 10987  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 188466 - 188404
Alignment:
Q  182 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagcc 244  Q
    |||||||| || |||| | ||||||| ||||||||||  |||||||||| |||||||||||||    
T  188466 gactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgctagagcc 188404  T

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