View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10438_low_20 (Length: 255)
Name: NF10438_low_20
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_20 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 175399 - 175639
Alignment:
| Q |
15 |
ataggaatataagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
175399 |
atagaaatataagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctgctgttagaaattctgtacaggacccctatcaa |
175498 |
T |
|
| Q |
115 |
gtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtcaaagatccaccac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
175499 |
gtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtcaaagatccaccgc |
175598 |
T |
|
| Q |
215 |
cgccaccacaacctcctcataagcccgtgggctttcttttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175599 |
cgccaccacaacctcctcataagcccgtgggctttcttttc |
175639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 1460457 - 1460283
Alignment:
| Q |
28 |
aaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttgaca |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || || |||| | ||||| |||||||||||| ||||| | |||| | || |||||||||||| |
|
|
| T |
1460457 |
aaaacaaaacttgtcggaccccctcggcctgttttctttgttatcaccagatctagtgttagaaattttgtacggtctccctgtgaaatcactcttgaca |
1460358 |
T |
|
| Q |
128 |
ctcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtca |
202 |
Q |
| |
|
||||| ||||| ||||| || || ||||| || ||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
1460357 |
ctcaagtgtgtttccaagcccttgaattctttaatttctgatcctaaattttccaaagatcaccttcgcttgtca |
1460283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 1471846 - 1471673
Alignment:
| Q |
26 |
agaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttga |
125 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||| || || |||| ||||||||||| ||||||||||||| | |||| | || |||||||||| |
|
|
| T |
1471846 |
agaaaacaaaactcttcggacccc-tcggcctgttttctttgttatcgatcgatctggtgctagaaattctgtatggtctccctgtgaaatcactcttga |
1471748 |
T |
|
| Q |
126 |
cactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgt |
200 |
Q |
| |
|
||||||| ||||| ||||| || || |||| ||| ||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
1471747 |
cactcaagtgtgtttccaagcccttgaatttcttaatttctgatcccaaatttgccaaaggtcaccttcgcttgt |
1471673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 1443030 - 1442853
Alignment:
| Q |
25 |
aagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttg |
124 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||| ||||||||||| |||| || ||||||||||||||||| | |||||| |||| | ||||| || ||| |
|
|
| T |
1443030 |
aagaaatcaaaactcgtcagacaccctcggcatgtttgctctgttatcacttgatctggtgttagaaatcttttacaggctccctttgaagtcgctattg |
1442931 |
T |
|
| Q |
125 |
acactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtca |
202 |
Q |
| |
|
|||||||| | |||| ||| | || | |||| ||||||||||||| || ||| |||| |||||||||||||||||| |
|
|
| T |
1442930 |
acactcaagtaagtctgcaagctcttgatttccattatttctgatcctaacttcaccaaagatcaccttcgcttgtca |
1442853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 371628 - 371535
Alignment:
| Q |
113 |
aagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtcaaaga |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| || || |||||| ||||||| ||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
371628 |
aagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattatttccgatcctaaattcgccaaagatcactttcgcttgtcaaaga |
371535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 55418944 - 55419058
Alignment:
| Q |
84 |
tgttagaaattctgtacaggacccctatcaagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaa |
183 |
Q |
| |
|
|||||||||| ||||| ||| ||| | ||||||||| ||| |||||| ||||| | ||| || || ||| |||| ||||||||||||| ||| ||||| |
|
|
| T |
55418944 |
tgttagaaatcctgtataggcttcctgtgaagtcactcatgatactcaagtgtgtttgcaagcccttgaatgccttaatttctgatcccatatttgccaa |
55419043 |
T |
|
| Q |
184 |
tgatcaccttcgctt |
198 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
55419044 |
agatcacattcgctt |
55419058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University