View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_23 (Length: 251)

Name: NF10438_low_23
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_23
NF10438_low_23
[»] chr4 (2 HSPs)
chr4 (79-147)||(16006773-16006841)
chr4 (4-54)||(16006718-16006768)
[»] chr6 (2 HSPs)
chr6 (163-237)||(21142933-21143008)
chr6 (163-198)||(17190629-17190664)
[»] chr3 (1 HSPs)
chr3 (162-198)||(7117276-7117312)
[»] chr2 (2 HSPs)
chr2 (161-201)||(19089460-19089500)
chr2 (159-228)||(26538859-26538928)
[»] chr7 (2 HSPs)
chr7 (161-228)||(20362648-20362715)
chr7 (167-198)||(3590565-3590596)
[»] scaffold0184 (1 HSPs)
scaffold0184 (163-198)||(10945-10980)


Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 16006773 - 16006841
Alignment:
Q  79 tattagaatcaagaaaattgaaattggttaggtagggtcgttccaaacattttatagattttgatctat 147  Q
    ||||| ||| |||||||||| |||| |||||| |||||||||||| ||||||||||| |||||||||||    
T  16006773 tattataattaagaaaattggaatttgttaggcagggtcgttccatacattttataggttttgatctat 16006841  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 16006718 - 16006768
Alignment:
Q  4 accatcacgatgttgtaagcagaaaatgtataatcaaccaatattagaatc 54  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  16006718 accatcacaatgttgtaatcagaaaatgtataatgaaccaatattagaatc 16006768  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 21142933 - 21143008
Alignment:
Q  163 tgttatgaataatattaatatgatgtggatgtccatatttcacaagg-tttctatgttccttaactcgttagagtt 237  Q
    ||||||| |||||||||||||||||||||||||||||||||| | || |||||| |||| ||||||| | ||||||    
T  21142933 tgttatgtataatattaatatgatgtggatgtccatatttcatatggctttctacgttctttaactcctaagagtt 21143008  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 17190629 - 17190664
Alignment:
Q  163 tgttatgaataatattaatatgatgtggatgtccat 198  Q
    ||||||||||||||||||||||||||||||||||||    
T  17190629 tgttatgaataatattaatatgatgtggatgtccat 17190664  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 7117312 - 7117276
Alignment:
Q  162 gtgttatgaataatattaatatgatgtggatgtccat 198  Q
    |||||||||||||||||||||||||||||||||||||    
T  7117312 gtgttatgaataatattaatatgatgtggatgtccat 7117276  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 19089460 - 19089500
Alignment:
Q  161 agtgttatgaataatattaatatgatgtggatgtccatatt 201  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19089460 agtgttatgaataatattattatgatgtggatgtccatatt 19089500  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 26538928 - 26538859
Alignment:
Q  159 gaagtgttatgaataatattaatatgatgtggatgtccatatttcacaaggtttctatgttccttaactc 228  Q
    ||||||||||||||||||||| |||||| || ||||||||||| |  | | ||||||| |||||||||||    
T  26538928 gaagtgttatgaataatattattatgatatgaatgtccatattacctaggttttctatattccttaactc 26538859  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 20362648 - 20362715
Alignment:
Q  161 agtgttatgaataatattaatatgatgtggatgtccatatttcacaagg-tttctatgttccttaactc 228  Q
    |||||||||||| ||| ||||||||||||||||||||| || |  |||| |||||||||||||||||||    
T  20362648 agtgttatgaatgataataatatgatgtggatgtccat-ttccctaaggctttctatgttccttaactc 20362715  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 198
Target Start/End: Complemental strand, 3590596 - 3590565
Alignment:
Q  167 atgaataatattaatatgatgtggatgtccat 198  Q
    ||||||||||||||||||||||||||||||||    
T  3590596 atgaataatattaatatgatgtggatgtccat 3590565  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 10980 - 10945
Alignment:
Q  163 tgttatgaataatattaatatgatgtggatgtccat 198  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10980 tgttatgaataatattaatgtgatgtggatgtccat 10945  T

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