View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10438_low_25 (Length: 249)
Name: NF10438_low_25
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6976819 - 6977057
Alignment:
| Q |
1 |
caccgtcgtggtagtgtttatatctactaacattttgtaaatttgatgtgtagattggtgatgccttgaagaagttgtttgctaatggagttgttaagcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6976819 |
caccgtcgtggtagtgtttatatctactaacattttgtaaatttaatgtgtagattggtgatgccttgaagaagttgtttgctaatggagttgttaagcg |
6976918 |
T |
|
| Q |
101 |
tgaagagatgtggatcacatccaagctgtggtttgttctttttatatttactttttaatgtttgcaagttaagatatttgattacatggcttatgtttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6976919 |
tgaagagatgtggatcacatccaagctgtggtttgttctttttatatttactttttaatgtttgcaagttaagatatttgattacatggcttatgtttgt |
6977018 |
T |
|
| Q |
201 |
aaacaactcattgatcatttagtctgcaactctgtctct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6977019 |
aaacaactcattgatcatttagtctgcaactctgtctct |
6977057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 6958935 - 6959067
Alignment:
| Q |
8 |
gtggtagtgtttatatctactaacattttgtaaatttgatgtgtagattggtgatgccttgaagaagttgtttgctaatggagttgttaagcgtgaagag |
107 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6958935 |
gtggtaatgtttctatctgttaacattttgtaaatgttatgt--agattggtgatgccttgaagaagttgtttgctaatggagtagttaagcgtgaagag |
6959032 |
T |
|
| Q |
108 |
atgtggatcacatccaagctgtggtttgttctttt |
142 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
6959033 |
atgtggatcacgtccaagctatggtttgtcctttt |
6959067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University