View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_3 (Length: 523)
Name: NF10438_low_3
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 54472883 - 54472399
Alignment:
| Q |
1 |
tgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagattaggatttaaattgtacaacttgtatttatatattacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54472883 |
tgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagaataggatttaaattgtacaacttgtatttatatattacg |
54472784 |
T |
|
| Q |
101 |
gttcaggcttcaaacccgcgcccctaatcaccccacgcaacttaccttcgtgtaactgtgttggttcaaaaaggcatgtcactctcgcttcgcttaattg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472783 |
gttcaggcttcaaacccgcgtccctaatcacccctcgcaacttaccttcgtgtaactgtgttggttcaaaaaggcatgtcactctcgcttcgcttaattg |
54472684 |
T |
|
| Q |
201 |
actctcccacttattagcattataagacatactcaacatatacaactagccttttaacaaatgatttgaacaaattagatcctttatgaccagggattga |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472683 |
actctcccacttattagcattataacacatactcaacatatacaactagccttttaacaaatgatttgaacaaattagatcctttatgaccagggattga |
54472584 |
T |
|
| Q |
301 |
taaattcaaagataac--nnnnnnnnnatatctaacggtttctacatttgcaacaccatattgtagctacataagattcaaatttggatcctctaccgcg |
398 |
Q |
| |
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|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472583 |
taaattcaaagataacattttttttttatatcttacagtttctacatttgcaacaccatattgtagctacataagattcaaatttggatcctctaccgcg |
54472484 |
T |
|
| Q |
399 |
tcgactatggcaccatgcaaaagctttagaggatccatttctgatcnnnnnnntaagaataggctatgaatcattaattaattaa |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54472483 |
tcgactatggcaccatgcaaaagctttagaggatccatttctgatcaaaaaaataagaataggctatgaatcattaattaattaa |
54472399 |
T |
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