View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_30 (Length: 230)
Name: NF10438_low_30
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 55907195 - 55906976
Alignment:
| Q |
7 |
tagatttgatggcttaggttaataaggtttttatgaggattagggttcnnnnnnnnnnnnnngacagaatttgagtatggttacgaacttgagtgtgta- |
105 |
Q |
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| T |
55907195 |
tagatttgatggcttaggttaataaggtttttatgaggattagggttcttttttctttttt-gacagaatttgagtatggttacgaacttgagtgtgtat |
55907097 |
T |
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| Q |
106 |
-aaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaatttgacggcatttgagaatattcattcaag |
204 |
Q |
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| T |
55907096 |
aaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaatttgacggcatttgagaatattcattcaag |
55906997 |
T |
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| Q |
205 |
aagagtgttgtgtacacttct |
225 |
Q |
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||||||||||||||||||||| |
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| T |
55906996 |
aagagtgttgtgtacacttct |
55906976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 1035934 - 1035726
Alignment:
| Q |
10 |
atttgatggcttaggttaataaggtttttatgaggattagggttcnnnnnnnnnnnnnngacagaatttgagtatggttacgaacttgagtgtgtaaaat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
1035934 |
atttgatggcttaggttaataaggtttttatgaggattagggttcttttttctttttttgaca-------agtatggttacgaacttgagtgtttaaaat |
1035842 |
T |
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| Q |
110 |
gtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaatttgacggcatttgagaatattcattcaagaagag |
209 |
Q |
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| T |
1035841 |
gtgtgacaaaatcaaggattcagtgagaaatactaaaagagttcaaacttgagtatagttacgaatttgaaggcatttgagaatattcattcaagaagag |
1035742 |
T |
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| Q |
210 |
tgttgtgtacacttct |
225 |
Q |
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||||| ||| |||||| |
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| T |
1035741 |
tgttgggtatacttct |
1035726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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