View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_32 (Length: 210)
Name: NF10438_low_32
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 34748140 - 34747980
Alignment:
| Q |
34 |
ataaccacgcctgatgtacataatcttttagagttgcataacatttttattcttatgtggcatgctatattttatcccaattcaggaactcactcaaact |
133 |
Q |
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| T |
34748140 |
ataaccacgcctgatgtacataatcttttagagttgcataacatttttattcttatgtggcatgctatgttttatcctaattcaggaactcattgaaact |
34748041 |
T |
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| Q |
134 |
gttgtgtctcatcccactttattttatttttcttcgggtataagctaattgaagttaatcg |
194 |
Q |
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| T |
34748040 |
gtagtgtcttatcccactttattttatttttcttcgggtataagctaattgaagttaatcg |
34747980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 3202964 - 3203106
Alignment:
| Q |
51 |
acataatcttttagagttgcataacatttttattcttatgtggcatgctatattttatcccaattcaggaactcactcaaactgttgtgtctcatcccac |
150 |
Q |
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| T |
3202964 |
acataatcttttagagttgaataacatttttattcttatgtggcatgctatgttttatcccgattcgggaactcactgagattgtagtgcctcatcccac |
3203063 |
T |
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| Q |
151 |
tttattttatttttcttcgggtataagctaattgaagttaatcg |
194 |
Q |
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| T |
3203064 |
tctcttgt-ttccttttcaggtataagctatttgaagttaatcg |
3203106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 18534869 - 18534724
Alignment:
| Q |
51 |
acataatcttttagagttgcataacat-ttttattcttatgtggcatgctatattttatcccaattcaggaactcactcaaactgttgtgtctcatccca |
149 |
Q |
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| T |
18534869 |
acataatcttttagagttgaataccatgttttattcttatgtggcatactatgatttatcctgattcgggaactcactgagaccgtaatgtctcatccca |
18534770 |
T |
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| Q |
150 |
ctttatt-ttatttttcttcgggtataagctaattgaagttaatcg |
194 |
Q |
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| T |
18534769 |
ctatattgtttcttttttttaggtataagctattcgaagttaatcg |
18534724 |
T |
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