View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_4 (Length: 508)

Name: NF10438_low_4
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_4
NF10438_low_4
[»] chr5 (3 HSPs)
chr5 (17-500)||(41465640-41466123)
chr5 (142-500)||(41654449-41654804)
chr5 (294-329)||(41305312-41305347)
[»] chr6 (1 HSPs)
chr6 (175-502)||(12438280-12438607)
[»] chr2 (1 HSPs)
chr2 (187-498)||(2433383-2433694)
[»] chr1 (3 HSPs)
chr1 (262-338)||(12609968-12610044)
chr1 (286-338)||(15885823-15885875)
chr1 (286-338)||(12637088-12637140)
[»] chr4 (1 HSPs)
chr4 (304-338)||(55954999-55955033)
[»] chr3 (5 HSPs)
chr3 (187-329)||(22986265-22986407)
chr3 (367-461)||(22986445-22986539)
chr3 (301-342)||(22831937-22831978)
chr3 (301-342)||(22916728-22916769)
chr3 (301-342)||(22941431-22941472)
[»] chr8 (1 HSPs)
chr8 (301-342)||(5594087-5594128)


Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 41466123 - 41465640
Alignment:
Q  17 aacaagaaacgggaactagtatcaaatcaatttttcttcttgatgatgaactcattgcttcagacatttctagattctccatggttaatccactaggaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41466123 aacaagaaacgggaactagtatcaaatcaatttttcttcttgatgatgaactcattgcttcagacatttctagattctccatggttaatccactaggaag 41466024  T
Q  117 ttcccagttaaaatggtaaagaagttgtgcaagagatagttcaatactagacacaccaaacaaaataccgggacaaattctcctaccagcaccgaacggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41466023 ttcccagttaaaatggtaaagaagttgtgcaagagatagttcaatactagacacaccaaacaaaataccgggacaaattctcctaccagcaccgaacggt 41465924  T
Q  217 atgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccggttcactccaatactttggatctcttccaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41465923 atgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccggttcactccaatactttggatctcttccaa 41465824  T
Q  317 tcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctcacaagtttctctgcattctcttgggagaagaagagggaaagg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41465823 tcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctcacaagtttctctgcattctctagggagaagaagagggaaagg 41465724  T
Q  417 agggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaagagatgtttcatcaatgtatcctttgct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41465723 agggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaagagatgtttcatcaatgtatcctttgct 41465640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 500
Target Start/End: Complemental strand, 41654804 - 41654449
Alignment:
Q  142 tgtgcaagagatagttcaatactagacacaccaaacaaaataccgggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttat 241  Q
    ||||||||||  ||||| ||||||||  || ||||  | || || ||||| |||||| | || ||||| || |||||| | |||| |||||| ||| |      
T  41654804 tgtgcaagaggaagttctatactagatgcagcaaaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctga 41654705  T
Q  242 aatcaattgaactctccaaaaatctctccggaataaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatttactatcacttt 341  Q
    |||||||||||   ||||| || ||||| |||  |||||||||   |||| ||||||||||| | ||||||||||| ||||||||||| || | |||||     
T  41654704 aatcaattgaagaatccaagaacctctctggataaaacttttctccttcaatccaatacttttggtctcttccaattgcccatgcattcacaaacacttg 41654605  T
Q  342 gtttccggcatgtattgtgtagcctttaatctcacaagtttctctgcattctcttgggagaagaagagggaaaggagggtgcaatcttagtgtttctttg 441  Q
      |||| ||  |||||||||| || || ||||||||||||||  | || ||||| |   |||  | |||   |||||| |||| ||||| |||||||||     
T  41654604 tgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctag---gaaagacaggattaggaggatgcactcttaatgtttcttta 41654508  T
Q  442 atgactgctttcaaatatttcagtccttgaagagatgtttcatcaatgtatcctttgct 500  Q
    || |||||||| | |||||||||| ||||||||  | |||||||||  |||||| ||||    
T  41654507 ataactgcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgct 41654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 41305347 - 41305312
Alignment:
Q  294 ccaatactttggatctcttccaatcgcccatgcatt 329  Q
    |||||||||||||||||||||||||||||| |||||    
T  41305347 ccaatactttggatctcttccaatcgcccaagcatt 41305312  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 175 - 502
Target Start/End: Original strand, 12438280 - 12438607
Alignment:
Q  175 aacaaaataccgggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaa 274  Q
    ||||| || |||||||| ||||| || |||||||| || |||||  | || | |||||| ||||| |||||||||| ||  || | ||||||||| |||     
T  12438280 aacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggat 12438379  T
Q  275 taaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctc 374  Q
    ||||||||||   |||| ||||||||||||| ||||||||||| ||||||||||| || | |||||   |||||||  ||||| |||| || |||| | |    
T  12438380 taaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccac 12438479  T
Q  375 acaagtttctctgcattctcttgggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaaga 474  Q
    |||| ||||  | || |||||||| |  || |||||   |||||||||||||||||  |||||||| || |||||||| |||||||| ||| ||||||||    
T  12438480 acaattttcaatacactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaaga 12438579  T
Q  475 gatgtttcatcaatgtatcctttgcttc 502  Q
      | |||||||||  ||||| |||||||    
T  12438580 tttatttcatcaacatatcccttgcttc 12438607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 498
Target Start/End: Complemental strand, 2433694 - 2433383
Alignment:
Q  187 ggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccg 286  Q
    ||||| |||||||| || ||||| || |||||||| |||| |||||| ||||| ||||||| |  ||  ||||  || ||||| |||  |||||||||      
T  2433694 ggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctc 2433595  T
Q  287 gttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctcacaagtttctct 386  Q
     ||| |||||||||||| | |||||||| || |||||| |||| || | |||||   |||| |   |||||||||| || |||||||||||||||||  |    
T  2433594 cttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatctcacaagtttcaat 2433495  T
Q  387 gcattctcttgggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaagagatgtttcatca 486  Q
     || |||||||| || || |||||   ||| |||||||||||||  |||||||| || | |||||| | |||||||||| |||||| |  | ||||||||    
T  2433494 acactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaaatttatttcatca 2433395  T
Q  487 atgtatcctttg 498  Q
    || |||||||||    
T  2433394 atatatcctttg 2433383  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 12609968 - 12610044
Alignment:
Q  262 aatctctccggaataaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 338  Q
    ||||||||||||  |||||| || |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  12609968 aatctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcac 12610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 15885875 - 15885823
Alignment:
Q  286 ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 338  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  15885875 ggttcagtccaatactttggatctcttccaatcgcccatgcattgactatcac 15885823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 12637088 - 12637140
Alignment:
Q  286 ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 338  Q
    |||||| |||| |||||||||||||| ||||| | ||||||||||||||||||    
T  12637088 ggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 12637140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 55954999 - 55955033
Alignment:
Q  304 ggatctcttccaatcgcccatgcatttactatcac 338  Q
    |||||||||||||| ||||||||||||||||||||    
T  55954999 ggatctcttccaattgcccatgcatttactatcac 55955033  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  187 ggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccg 286  Q
    |||||||||||||| |||||||| || || ||||| |||| |||||  |||||  ||||||| ||||| || | ||| ||||| |||  |||||| || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  287 gttcactccaatactttggatctcttccaatcgcccatgcatt 329  Q
    | ||| ||||||| || ||||| | |||||| ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 461
Target Start/End: Original strand, 22986445 - 22986539
Alignment:
Q  367 ttaatctcacaagtttctctgcattctcttgggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatattt 461  Q
    ||||||||||||| || ||  || |||||||| ||||| || || | || |||||| | ||||||||  |||||||| |||||||||||||||||    
T  22986445 ttaatctcacaagcttgtccacactctcttggaagaaggagtggaacagaagggtgtagtcttagtgactctttgattactgctttcaaatattt 22986539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 22831937 - 22831978
Alignment:
Q  301 tttggatctcttccaatcgcccatgcatttactatcactttg 342  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  22831937 tttggatctcttccaatagcccaagcattcactatcactttg 22831978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 22916769 - 22916728
Alignment:
Q  301 tttggatctcttccaatcgcccatgcatttactatcactttg 342  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  22916769 tttggatctcttccaatggcccaagcattcactatcactttg 22916728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 22941472 - 22941431
Alignment:
Q  301 tttggatctcttccaatcgcccatgcatttactatcactttg 342  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  22941472 tttggatctcttccaatggcccaagcattcactatcactttg 22941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 5594128 - 5594087
Alignment:
Q  301 tttggatctcttccaatcgcccatgcatttactatcactttg 342  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  5594128 tttggatctcttccaatagcccaagcattcactatcactttg 5594087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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