View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_5 (Length: 475)
Name: NF10438_low_5
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 32733268 - 32732826
Alignment:
| Q |
18 |
cacagagttacaaagggttctcattgtgtctgaatttttgcctatatctataggtcttgattcaccactgtctatgatgtctctgaggcgtgaggcaaat |
117 |
Q |
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| T |
32733268 |
cacagagttacaaagggttctcattgtgtctgaatttttgcctatatctataggtcttgattcaccactgtctatgatgtctctgaggcgtgaggcaaat |
32733169 |
T |
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| Q |
118 |
gtgctgttgttttccaaagggagtgatgggtataggagaagccctgcttcaaggattttgagctgtctcttttgccacatatggtactcatttgaatcgc |
217 |
Q |
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| T |
32733168 |
gtgctgttgttttccaaagggagtgatgggtataggagaagccctgcttcaaggattttgagctgtctcttttgccacatatggtactcatttgaatcac |
32733069 |
T |
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| Q |
218 |
tgaattctgatggctttaggtgtcttatgagttccaatggtagaattatagtttctgatctctttcccatctgcaaatattattcatgaaactagttatc |
317 |
Q |
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| T |
32733068 |
tgaattctgatggctttaggtgtcttatgagttccaatggtagaattataatttctgatctctttcccatctgcaaatattattcatgaaactagttatt |
32732969 |
T |
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| Q |
318 |
agaccaaaaaacattttaatttagccatcacttcatgttataggctcattttcattcatgacataaagagacatcatcaaatcctatgcaacaaaagata |
417 |
Q |
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| T |
32732968 |
agaccaaaaaacattttaatttagccatcacttcatgttataggctcattttcattcatgacataaagagacatcatcaaatcctatgcaacaaaagata |
32732869 |
T |
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| Q |
418 |
taacggtagagcaaatagtcattttggtccgtgaggtggtgtc |
460 |
Q |
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| T |
32732868 |
taacggtagagcaaatagtcattttggtccatgaggtggtgtc |
32732826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 16795237 - 16795346
Alignment:
| Q |
165 |
ttcaaggattttgagctgtctcttttgccacatatggtactcatttgaatcgctgaattctgatggctttaggtgtcttatgagttccaatggtagaatt |
264 |
Q |
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|||||||| |||||| ||||| ||||||||||||| |||||||| ||||| |||||||||| || |||||||| | || ||||| ||||| |||||| |
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| T |
16795237 |
ttcaaggactttgagttgtctattttgccacatatagtactcatgagaatcactgaattctgtcggttttaggtggcgtaatagttctaatggcagaatt |
16795336 |
T |
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| Q |
265 |
atagtttctg |
274 |
Q |
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| T |
16795337 |
attgtttctg |
16795346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 14878693 - 14878823
Alignment:
| Q |
111 |
ggcaaatgtgctgttgttttccaaagggagtgatgggtataggagaagccctgcttcaaggattttgagctgtctcttttgccacatatggtactcattt |
210 |
Q |
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| T |
14878693 |
ggcaaatgtgttggtcttttctaccgggattgaagggtgtatgagaagccctgtttcaaggatcttgagctgccgcttttgccacaaatggtattcatga |
14878792 |
T |
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| Q |
211 |
gaatcgctgaattctgatggctttaggtgtc |
241 |
Q |
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| T |
14878793 |
ggattactgaattctgatggtttgaggtgtc |
14878823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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