View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10438_low_6 (Length: 457)

Name: NF10438_low_6
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10438_low_6
NF10438_low_6
[»] scaffold0149 (1 HSPs)
scaffold0149 (18-439)||(31821-32235)
[»] chr5 (5 HSPs)
chr5 (128-264)||(16551055-16551191)
chr5 (127-259)||(13002515-13002647)
chr5 (127-259)||(13077173-13077305)
chr5 (127-217)||(18476267-18476357)
chr5 (131-207)||(18220882-18220958)
[»] chr4 (3 HSPs)
chr4 (125-259)||(17433413-17433547)
chr4 (142-217)||(10583738-10583813)
chr4 (127-217)||(8718016-8718106)
[»] chr7 (5 HSPs)
chr7 (162-216)||(19416366-19416420)
chr7 (183-259)||(31611777-31611853)
chr7 (139-217)||(27128754-27128831)
chr7 (163-204)||(29020652-29020693)
chr7 (175-223)||(7395171-7395219)
[»] chr1 (3 HSPs)
chr1 (192-308)||(50049700-50049816)
chr1 (127-207)||(20618060-20618140)
chr1 (137-207)||(19623639-19623709)
[»] chr8 (2 HSPs)
chr8 (127-223)||(11222919-11223015)
chr8 (170-225)||(26280046-26280101)
[»] chr2 (3 HSPs)
chr2 (128-223)||(15583000-15583095)
chr2 (165-223)||(22116571-22116629)
chr2 (127-217)||(22569603-22569693)
[»] chr6 (3 HSPs)
chr6 (142-207)||(28609182-28609247)
chr6 (236-290)||(3074299-3074353)
chr6 (126-207)||(15549447-15549528)
[»] scaffold0078 (1 HSPs)
scaffold0078 (142-226)||(18499-18583)


Alignment Details
Target: scaffold0149 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 32235 - 31821
Alignment:
Q  18 aggagggccaaggagcttgttgatgtttatgcaatacatatgaagattctctttctagttatattatccattggttattaaacactcttttgcgtcgaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32235 aggagggccaaggagcttgttgatgtttatgcaatacatatgaagattctctttctagttatattatccattggttattaaacactcttttgcgtcgaga 32136  T
Q  118 ttaaccgttaatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32135 ttaactgttaatagctaggattctatgtaccactattcatgtggatggttgtctatcatttatgaattcaatataatctttggtttaaatccgttcttaa 32036  T
Q  218 ggcttttgtggatgagcactccacaaatgaacttttgatttattatgtagcgagagattgccttattatctaaatgacattttttaaatcatctataagt 317  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  32035 ggcttttttggatgagcactccacaaataaacttttgatttattatgtagcgagagattgctttatcatctaagtgacattttttaaatcatctataagt 31936  T
Q  318 gctaagtgctatcactctaaatacaacgtttgaatctatattcatgtataactatctgagctaataccattgaaacaatggactattttgctaccgagca 417  Q
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31935 -------gctatcactctaaatacaacgtttggatctatattcatgtataactatctgagctaataccattgaaacaatggactattttgctaccgagca 31843  T
Q  418 tcagaagtgagttggttcattg 439  Q
    ||||||||||||||||||||||    
T  31842 tcagaagtgagttggttcattg 31821  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 16551191 - 16551055
Alignment:
Q  128 atagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttttgtg 227  Q
    |||| |||| |||||||||| |||  | || ||| | ||||||||| |||| || |||||||||||| |||||||||||||  ||||||| |||| ||||    
T  16551191 atagttagggttctatgtagaacttgtaatctggcttgttgtatatgatttttgcattcaatataatatttagtttaaatctattcttaatgcttatgtg 16551092  T
Q  228 gatgagcactccacaaatgaacttttgatttattatg 264  Q
    || |||||||| ||||||||| |||||||||| ||||    
T  16551091 gacgagcactctacaaatgaaattttgatttagtatg 16551055  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 13002647 - 13002515
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttttgt 226  Q
    |||| ||| |||||||||||  ||| || || ||| | ||||||||| ||||||| |||||||||||||||| ||||||||   |||||||  |||||||    
T  13002647 aatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaatatattcttaatacttttgt 13002548  T
Q  227 ggatgagcactccacaaatgaacttttgattta 259  Q
     || |||||||  |||||||  |||||||||||    
T  13002547 cgacgagcacttaacaaatgctcttttgattta 13002515  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 13077305 - 13077173
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttttgt 226  Q
    |||| ||| |||||||||||  ||| || || ||| | ||||||||| ||||||| |||||||||||||||| ||||||||   |||||||  |||||||    
T  13077305 aatatctaagattctatgtattactcttaatttggctagttgtatatgatttatgcattcaatataatctttggtttaaatatattcttaatacttttgt 13077206  T
Q  227 ggatgagcactccacaaatgaacttttgattta 259  Q
     || |||||||  |||||||  |||||||||||    
T  13077205 cgacgagcacttaacaaatgttcttttgattta 13077173  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 18476357 - 18476267
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    ||||||||||| ||||||||   || || || | ||||||||||||| ||||| | |||||||||||||||||||||||||  ||||||||    
T  18476357 aatagctaggaatctatgtattgctcttaatattgatggttgtatatgatttacgcattcaatataatctttagtttaaatatgttcttaa 18476267  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 18220958 - 18220882
Alignment:
Q  131 gctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaat 207  Q
    ||||| ||||||||| | ||| || || ||| ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  18220958 gctagaattctatgtggtactcttaatttggttggttgtatatgatttatgcattcaatataatttttagtttaaat 18220882  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 259
Target Start/End: Complemental strand, 17433547 - 17433413
Alignment:
Q  125 ttaatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggctttt 224  Q
    ||||||||||||||||||||||||||| ||  | ||| || |||||||| ||||||| |||||||||||||||| ||||||||  |||||||  ||||||    
T  17433547 ttaatagctaggattctatgtagcactcttagtctggctgattgtatatgatttatgcattcaatataatctttggtttaaatgtgttcttactgctttt 17433448  T
Q  225 gtggatgagcactccacaaatgaacttttgattta 259  Q
    |  || | ||| | |  ||||||||||||||||||    
T  17433447 gccgacgtgcaattcgtaaatgaacttttgattta 17433413  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 10583738 - 10583813
Alignment:
Q  142 atgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    |||||| ||| || || ||| ||||||||||| |||| || ||||||| ||||||||||||||||| |||||||||    
T  10583738 atgtagtactcttaatctggctggttgtatatgatttttgcattcaatgtaatctttagtttaaattcgttcttaa 10583813  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 8718106 - 8718016
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    ||||| ||||||| |||| || ||| || || ||| |||||||||   ||||||| ||| |||||||||||||||||||||  ||||||||    
T  8718106 aatagttaggattttatgcagtactcttaatatggctggttgtattcgatttatgcatttaatataatctttagtttaaatatgttcttaa 8718016  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 19416420 - 19416366
Alignment:
Q  162 atggttgtatatcatttatgaattcaatataatctttagtttaaatccgttctta 216  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  19416420 atggttgtatatgatttatgtattcaatataatctttagtttaaattcgttctta 19416366  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 31611853 - 31611777
Alignment:
Q  183 attcaatataatctttagtttaaatccgttcttaaggcttttgtggatgagcactccacaaatgaacttttgattta 259  Q
    ||||||||||||||||||||||| |  |||||||| |||||||| |  || ||||||||||||||| ||||||||||    
T  31611853 attcaatataatctttagtttaactttgttcttaaagcttttgttggcgaacactccacaaatgaaattttgattta 31611777  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 27128831 - 27128754
Alignment:
Q  139 tctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    ||||||||| |||||| || | | ||||||||||| ||||||  |||||||||||| ||||||||||||  ||||||||    
T  27128831 tctatgtagtactattaatcttgttggttgtatatgatttatacattcaatataat-tttagtttaaatatgttcttaa 27128754  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 29020693 - 29020652
Alignment:
Q  163 tggttgtatatcatttatgaattcaatataatctttagttta 204  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||    
T  29020693 tggttgtatatgatttatgtatttaatataatctttagttta 29020652  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 7395219 - 7395171
Alignment:
Q  175 atttatgaattcaatataatctttagtttaaatccgttcttaaggcttt 223  Q
    ||||||| ||||||||||| |||||||||||||  |||||||| |||||    
T  7395219 atttatgcattcaatataacctttagtttaaatgtgttcttaatgcttt 7395171  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 50049816 - 50049700
Alignment:
Q  192 aatctttagtttaaatccgttcttaaggcttttgtggatgagcactccacaaatgaacttttgatttattatgtagcgagaga-ttgccttattatctaa 290  Q
    ||||||| ||||||||  |||||||| |||||||  ||  |||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||    
T  50049816 aatctttggtttaaatttgttcttaatgcttttgccgacaagcactccacaaatgaactttttatttaatatgtagc-aaagatttgccttattatctaa 50049718  T
Q  291 atgacattttttaaatca 308  Q
      |||||  |||||||||    
T  50049717 gagacatggtttaaatca 50049700  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 20618140 - 20618060
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaat 207  Q
    ||||| ||||| ||||||||| ||| || || ||| ||||||||||| ||||||| ||||||||||||||||| |||||||    
T  20618140 aatagataggaatctatgtagtactcttaatctggttggttgtatatgatttatggattcaatataatctttaatttaaat 20618060  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 19623639 - 19623709
Alignment:
Q  137 attctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaat 207  Q
    |||||||| ||| || || || ||| ||||||||||| ||||||  ||||||| |||||||||||||||||    
T  19623639 attctatgcagcgctcttaatatggttggttgtatatgatttatccattcaatgtaatctttagtttaaat 19623709  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 11223015 - 11222919
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttt 223  Q
    ||||| ||| ||||||||||| ||| || || ||  |||| |||||| ||||||||||||||| ||| |||| |||||||||||||||||| |||||    
T  11223015 aatagttagtattctatgtagtacttttaatttgtttggtcgtatattatttatgaattcaatttaaacttttgtttaaatccgttcttaatgcttt 11222919  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 26280101 - 26280046
Alignment:
Q  170 atatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttttg 225  Q
    |||| ||||||| |||||||||||||||  ||||||||| |||||||| |||||||    
T  26280101 atatgatttatgcattcaatataatcttaggtttaaatctgttcttaatgcttttg 26280046  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 15583095 - 15583000
Alignment:
Q  128 atagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttt 223  Q
    |||||||| ||||| |||||  || || || ||| ||||||||||| ||||||| ||| ||||||||||||||||||| || |||||||| |||||    
T  15583095 atagctagaattctttgtagtgctcttaatatgggtggttgtatatgatttatgtattaaatataatctttagtttaattctgttcttaatgcttt 15583000  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 22116571 - 22116629
Alignment:
Q  165 gttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttt 223  Q
    ||||||||| ||||||| ||||||||||||| || |||||||||  ||||||| |||||    
T  22116571 gttgtatatgatttatgcattcaatataatccttggtttaaatcatttcttaatgcttt 22116629  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 22569603 - 22569693
Alignment:
Q  127 aatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaa 217  Q
    ||||| ||||||||||||||| | | ||||| | | | ||||||||| ||||||  ||||||| || | ||||||||||||| ||||||||    
T  22569603 aatagttaggattctatgtagtattcttcatcttgttagttgtatatgatttatctattcaatgtagtatttagtttaaatctgttcttaa 22569693  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 28609182 - 28609247
Alignment:
Q  142 atgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaat 207  Q
    |||||| |||||| || ||  ||||||||||| ||||||| |||||||||||||||| ||||||||    
T  28609182 atgtagtactattaatctgattggttgtatatgatttatgcattcaatataatcttttgtttaaat 28609247  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 3074353 - 3074299
Alignment:
Q  236 ctccacaaatgaacttttgatttattatgtagcgagagattgccttattatctaa 290  Q
    |||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  3074353 ctccgcaattgaacttttgatttactttatagcaagagattgccttattatctaa 3074299  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 15549528 - 15549447
Alignment:
Q  126 taatagctaggattctatgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaat 207  Q
    |||||||||||| ||||||||| ||| || || ||  |  |||| ||| ||||||| |||||||||||| ||||||||||||    
T  15549528 taatagctaggaatctatgtagtacttttaatctgactttttgtgtatgatttatgcattcaatataatttttagtttaaat 15549447  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 18583 - 18499
Alignment:
Q  142 atgtagcactattcatgtggatggttgtatatcatttatgaattcaatataatctttagtttaaatccgttcttaaggcttttgt 226  Q
    |||||| ||| || || ||| ||||| || || ||||||| ||||||| |||| |||||||||||||| ||||||| | ||||||    
T  18583 atgtagtactcttaatctggctggttatacatgatttatgcattcaatttaatatttagtttaaatccattcttaaagattttgt 18499  T

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